| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3268 |
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| Symbol | |
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| ID | 4040103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 3542536 |
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| End bp | 3544668 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637978674 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_585409 |
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| Protein GI | 94312199 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCACGG CACGATGGGT CAAGGCGCTC GCGGGCGCGG CAACGATGGT GCTGGTGCTC
GCCTCTTCGG CGGCGCTGGC GCAGAACAAC CAGGTCAAGC AGATGGAAGC CAACGTGCTT
GGCGAGCAGA CCGTATTTAC GGTCGATCTG CAGGGACCAT TGGCGCAGAA ACCAGCGGAC
TTCACCACGC AGAATCCGGC GAAGATCGCG ATCGACTTCT TCGACACGGG CTTCGCGGCG
GGGCGCGCCC AGTACGAGTA CGGCGGCAAG GTGCTCAAGA GCGCCAACGT GATGCAGATT
GGGGACCGCA CACGCGTGGT GCTGAACCTG AGCCGGTCGA CAACATATCG CACCGAGGTG
CGTGGCAACC AGTTCGTGGT GATGCTGGAC AACGTCCAGC AGGCCGCGAC CGGCGCGGTG
CCGACGTTCG CGCCGGCGAC GACGGTGCCG ACATCGGCGA TGGCAGCGAA TCGTCCGTCG
ATTCGGAACA TCGATTTCCG TCGCGGGGGC GATGGCGCCG GGCGTGTGGT GGTGGATCTC
TCGTCGCGTG ATTCAGGCAT CAACATCGCG CAGCAGGGCC AGAACCTCGT GGTCGACTTC
ATGGGCACGT CGGTGCCGGC GGATCTGCGC CGCCGCTTCG ATGTGACCGA TTTCGGCACG
CCAATCCAGA GCATGCGCGC GAGCGATGCC AATGGCAGCG CGAAACTGAC GATCGAGCCG
CGTGGCAACT GGGAGTACAG CTCGTACCAG ACGGACAACC AGTTCGTGGT GGAGGTGCGG
CAGGTCAAGG ATGACCCGAA CAAGCTGATC GCGGGCCAAG GCTTCCGCGG CGAGCGGCTA
TCCCTGAACT TCCAGAACAT CGACATCCGC TCGCTGCTGC AGGTGTTCGC CGACTTCACG
AACCTGAACA TCATCACGAG CGACACGGTC CAGGGCAACC TGACGCTGCG CCTGAAGGAT
GTGCCGTGGG ACCAGGCGCT GCAGATTGTG ATGGATTCGA AGGGCCTGGC CTCGCGCCGC
AACGGCAATG TGCTGTGGGT GGCGCCCAAG GCGGAACTGG CGACCAAGGA GAAGCTTGAA
CTCGAGGCGA TGCAGCAGAT CAACGAACTC GAGCCGATCC GCAGCCAGGT GTTCCAGCTC
AACTACCAGC GTGCCGACGA CGTTCGCAAG ATGCTGCTCG GCATGGTTAC AGGCACTGCC
GGGGCGGCAG GTGCGATGCC GGTGCCGGTT GGTGGCGCAG CAGGCATGAT GGGCGCGACG
CGGATGCTGT CCAAACGCGG TTCGCTGACG GCGGATCCCC GCACGAACCA GCTGTTCGTG
TCCGATGTAT CGAGCAAGCT GGAGGAAGTG CAGATCTTCC TGCAGAAGAT CGATATCCCG
GTTCGGCAGG TGATCATCGA GGCACGCATC GTTGAGGCTA GCGATACCTT CAGCCGGAAC
CTCGGTGTGA AGCTCGGCTT TGCGTTGCCG AAGTCCGGCA GCTCGCTGAG CAGCAACTAC
GGTAACTCGC TGCCGAATGC CACGAACGAC GGTACCCCGG CACTGAGCCT GCCGGCGGCA
GCCATCAACA GCGTGAACCC GGCTACGGCG GCATTCAGTA TCTTCAACGC CGCCGCGGGC
CGATTCCTGG ATCTGGAACT GTCCGCACTG GAAGCCGACG GCAAGGGCAA GATCATCTCG
AGCCCGCGCG TCGTGACGGC CAACAACATC AAGGCACTGA TCGAGCAGGG TACCGAACTG
CCGTACCAGT CGGCCACCTC AAGCGGCGCG ACCTCGGTGC AGTTCCGCAA GGCCAACCTG
AAGCTTGAAG TCACGCCGCA GATCACGCCG GAAGGCAATG TGCTGCTGGA CGTCGACGTG
AACAAGGACA GCGTCGGTAT CCGAACGGAC AACGGCTTCG CCATCGACAC CAAGCACGTG
CAGACGCAGG TGCTGGTGGA GAACGGCGGC ACGGTCGTAA TCGGCGGTAT CTATAGCCAG
GAAGAGTCCA ATACCGTGAA CAAGGTACCT TGGCTGGGCG ACCTCCCGGT GCTTGGCAAC
TTCTTCAAGA ACAACGCCAA GGTCAACAAC CGGACCGAAC TGCTGGTGTT CCTGACGCCG
CGTGTCCTGA ACGATAACGT GTCGCTCAAA TAA
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| Protein sequence | MITARWVKAL AGAATMVLVL ASSAALAQNN QVKQMEANVL GEQTVFTVDL QGPLAQKPAD
FTTQNPAKIA IDFFDTGFAA GRAQYEYGGK VLKSANVMQI GDRTRVVLNL SRSTTYRTEV
RGNQFVVMLD NVQQAATGAV PTFAPATTVP TSAMAANRPS IRNIDFRRGG DGAGRVVVDL
SSRDSGINIA QQGQNLVVDF MGTSVPADLR RRFDVTDFGT PIQSMRASDA NGSAKLTIEP
RGNWEYSSYQ TDNQFVVEVR QVKDDPNKLI AGQGFRGERL SLNFQNIDIR SLLQVFADFT
NLNIITSDTV QGNLTLRLKD VPWDQALQIV MDSKGLASRR NGNVLWVAPK AELATKEKLE
LEAMQQINEL EPIRSQVFQL NYQRADDVRK MLLGMVTGTA GAAGAMPVPV GGAAGMMGAT
RMLSKRGSLT ADPRTNQLFV SDVSSKLEEV QIFLQKIDIP VRQVIIEARI VEASDTFSRN
LGVKLGFALP KSGSSLSSNY GNSLPNATND GTPALSLPAA AINSVNPATA AFSIFNAAAG
RFLDLELSAL EADGKGKIIS SPRVVTANNI KALIEQGTEL PYQSATSSGA TSVQFRKANL
KLEVTPQITP EGNVLLDVDV NKDSVGIRTD NGFAIDTKHV QTQVLVENGG TVVIGGIYSQ
EESNTVNKVP WLGDLPVLGN FFKNNAKVNN RTELLVFLTP RVLNDNVSLK
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