| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3225 |
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| Symbol | |
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| ID | 4040059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3500875 |
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| End bp | 3502674 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637978630 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_585366 |
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| Protein GI | 94312156 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGCAA CATCCGGGCG ACCAGAGAAG CCCGAGGCAG CAACTCCGCA ATATTCTGTC
AGTCAGCGCT TCCTAAGAGT CTCCGCCGGT GCCTGCCTTG CCGTACTGAT GCTGTTGGCC
TGGCTGGTCT CTCATCAGTG GCAAGCATTC TCGCGCAGCG ACCAGGCACT CTCGGATTTC
GAGATCTTCC GTGCGGCGCT GCTGGCGATG GAAAAGGTAT CAGCAGAACG CGGCCCCATG
AATGCCGTGC TTGGCGAGGA TGTACCGATG CCGGCGCAGC GCATCGCGGC ACTACGCAAG
GCCCGCGAGG AAAGCGATGC CAGTCTGCGT GACCTCGACG CAGCGATCGA GGCTAGCCAC
TGCGAGGAGT GCGCCGCGCT TTACGTGACA GCCACCCACG CGATCACCAT GCTGGCGGAG
GCGCGCAAAC ATGCCGACGA CGTACTGCTG GTGCCGCGCC AGACCCGATC CCCAGAGCTG
CTGGACAACG CCGTTAACCA CATGGCGAAC GTCATCCCGA TCATTGCAGG CATCGCCGAT
GGCACCATCG GGGACATCGT CAGCGGCGAC GCTGCAGTCC TGGACGTCCT GCAGATGGCC
CGGCTCGCGG CCGCGCTGCG CGAACACGCC GGGCTGCTCG GTTCGCGCTT TACGGGCGCG
CTCGCATCGG ACCGGCAACT GACCGAACAG GAGCAGCAAC GCATCTTCAA CAGCGAGGGC
CGCGTGGAGC AGCTTCGCAC GCTCCTGGCA TCGCACGCCG GCCATCACCC TACCCTCGCG
CCGGAAGCGG TAAGACGTGT CGGCATGGTG TATGGCGAAG CCGGACTGGC TTATGTCACC
AAGGTCTACC GCCGCGCGAA ACGTCCGATG GGCGCCGGCA TCACCACCGG TGATTTCGCC
GCGCAGTATG TGCCGACGAT GCTGCCGATC GTCCAGTTGC GCGACGAGAT TCTCGACCAC
GCCCGCGCGC GCTTGCACCG CAACCGCGAC GTCACCCTGA CGCTGCTGCT CGGCGCATTC
GCCATCGCCT TCGCGCTGCT GGGAACGATG ATCTGGCTGC ATTCGCTGTT TCGCCGGCAG
ATCCTGAAAC CATTCTTCGC GGCCACACGG TCCATCCTGG CCATTGCGAA CGGCAATCTC
TCCGTACGCG TGCCATCGCC CAACAACTAC CGTGGCGAAA TCCGAGCGCT GCTCGAGGCC
GTTCACACAC TCAAGCGCTA CAGCCTGGAC AAGCAGCAAC TGGAACAAGA CCGCCAGCGA
CTGATCGCCC AGCTGACCAC CATGGCGGAA ACGGACGCGC TCACGCAGTT GCTGAACCGT
CGCGCACTCG AAGCACGGGC TTGCGACCTG TGCGCAAGCC CTGCAGCCGA CAAACCCTAC
GTCGCGCTGG TGATGTTCGA TATCGACCAT TTCAAGCGGA TCAACGACAC ATATGGGCAT
ATCGCGGGGG ACCGGGCGCT TGAGATCGTT GGCGCCGTGT GCCGGGAAGT GCTGGGTACC
GGAGACCTGG CCGCGCGCTT TGGCGGGGAA GAATTCGCGG TGGTTTCGCT GGTGAGCACA
CCCGGCGAAG CGTTGAGGCT CGCCGAGCAG CTAAAGGAAA AGCTGCGCGA GATCCGGGTG
ACGCTGGAGA GCGCCAGACC GTTCGGCATG ACGGTCAGCC TCGGCGTCGC CATCGGACGC
CGGGAGGATG TGGGCCAGGA CCTCTCGGCG CTGATCAGGC AGGCGGATCT GATGCTTTAT
CGGGCGAAGC GCGGGGGGAG GAATCGGATT GAGGGGGATT GGGAACTGAT GGTTGGTTGA
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| Protein sequence | MCATSGRPEK PEAATPQYSV SQRFLRVSAG ACLAVLMLLA WLVSHQWQAF SRSDQALSDF
EIFRAALLAM EKVSAERGPM NAVLGEDVPM PAQRIAALRK AREESDASLR DLDAAIEASH
CEECAALYVT ATHAITMLAE ARKHADDVLL VPRQTRSPEL LDNAVNHMAN VIPIIAGIAD
GTIGDIVSGD AAVLDVLQMA RLAAALREHA GLLGSRFTGA LASDRQLTEQ EQQRIFNSEG
RVEQLRTLLA SHAGHHPTLA PEAVRRVGMV YGEAGLAYVT KVYRRAKRPM GAGITTGDFA
AQYVPTMLPI VQLRDEILDH ARARLHRNRD VTLTLLLGAF AIAFALLGTM IWLHSLFRRQ
ILKPFFAATR SILAIANGNL SVRVPSPNNY RGEIRALLEA VHTLKRYSLD KQQLEQDRQR
LIAQLTTMAE TDALTQLLNR RALEARACDL CASPAADKPY VALVMFDIDH FKRINDTYGH
IAGDRALEIV GAVCREVLGT GDLAARFGGE EFAVVSLVST PGEALRLAEQ LKEKLREIRV
TLESARPFGM TVSLGVAIGR REDVGQDLSA LIRQADLMLY RAKRGGRNRI EGDWELMVG
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