Gene Rmet_3172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3172 
Symbol 
ID4040006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp3444791 
End bp3446440 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content60% 
IMG OID637978577 
Productcytochrome d1, heme region 
Protein accessionYP_585313 
Protein GI94312103 
COG category[C] Energy production and conversion 
COG ID[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGA AATCATGGAT GTTCCCCGCA CTGGCGGCCA TGCCGCTCTT CTTCTGGAGT 
GCGCACGGTA GCGCCCAGAC GGCGCCGACT CAGAATCCCG AGCCGAAGCT GACTGCGGAA
GAATTCAACC ACGCCAGGCA GATCTATTTC GAACGGTGCG CAGGCTGCCA TGGCGTGCTG
CGCAAGGGCG CCACGGGCAA ACCGCTGACA CCCGACATCA CGCGTGCCCG TGGCACCGAA
TACTTGAAGA CGTTCATCAA GTACGGCAGT CCGGCCGGTA TGCCCAACTG GGGCACCTCG
GGCGATCTCA CCGATCCCGA GGTCGATCTG ATGGCGCGCT ACATCCAGCT CGATCCTCCG
ACACCGCCGG AATTCTCGCT GGCCGACATC GAAAAATCGC GCAAGGACAT CGTGCCCGTG
GCCAAGCGGC CAACGCGCAA GATGAACAAC TACAACCTGC AGAACCTGTT CTCGGTCACG
CTGCGCGATT CCGGTGAGGT GGCCCTGATC GACGGCGACA GCAAGCAGAT CATCAATATC
GTCAAGACCG GCTACGCGGT GCACATCTCG CGCATGTCGG CGTCCGGGCG CTACCTGTAC
GTGATCGGCC GCGATGCGCG TCTGAACCTG ATCGACCTGT GGCTGCCCAA GCCGGACAAC
GTCGCGGAAG TAAAGATCGG TCTCGAGGCG CGTTCGGTGG AAACCTCGAA GTACAAGGGC
TACGAAGACA AGTACGCCGT GGCCGGCTCG TACTGGCCGC CGCAGTACGT GATCATGGAA
GGTGACACAC TCAAGCCGCT GAAGGTAGTG TCCACACGCG GCATGACCGT CGACAACGAG
TACCACCCCG AGCCGCGTGT CGCATCGATC GTTGCCAGCC ATTTCCGTCC CGAGTTCGTC
ATCAACGCGA AGGAAACAGG CAAGATCCTG ATGGTCGATT ATTCGGATCT GAAGAACCTG
AAGACCACCA CGATCGATTC CGCCAAGTTC CTTCATGACG GTGGTTTCGA CTCCACGGGT
CGCTACTTCC TGGTGGCCGC GAACGCATCG AACAAGATCG CTGTCGTGGA TACCAAGGAA
GACAAGCTGG CCGCGCTGGT CGATGTCGGC AAGACCCCGC ACCCGGGACG TGGCGCGAAC
TTCGTGCATC CGAAGTTCGG TCCGGTCTGG GCCACGAGCC ATCTCGGCGA CGAAACCATC
AGCCTGATCG GCACCGATCC CATCAACCAC AAGGCGCAGG CCTGGAAGGT GGTCGAAACG
CTCAAGGGAC AGGGCGGTGG CTCGCTGTTC ATCAAGACCA ATCCGAAGTC GCACAACCTG
TGGGTGGATA CGCCGCTCAA TCCCGACGCG AAGCTGAACC AGAGCGTGGC GGTGTTCGAT
ACGCAGAAGC TGGAAGACGG TTACAAGGTG CTGCCGATCG CCGAATGGGC GAACCTGAAG
GGCGAAGGCG CGAAGCGTGT GGTGCAGGCC GAGTACAACC AGGCCGGTGA TGAAGTCTGG
TTCTCGGTCT GGGGTACCAA GGATGGCGAG TCCGCGCTGG TCGTGGTCGA TGACAAGACC
CGCAAGCTCA AGACCGTGAT CAAGGACCCG CGTCTGATTA CCCCGACGGG CAAGTTCAAC
GCGCACAACA CACAACACGA CGTCTATTGA
 
Protein sequence
MKAKSWMFPA LAAMPLFFWS AHGSAQTAPT QNPEPKLTAE EFNHARQIYF ERCAGCHGVL 
RKGATGKPLT PDITRARGTE YLKTFIKYGS PAGMPNWGTS GDLTDPEVDL MARYIQLDPP
TPPEFSLADI EKSRKDIVPV AKRPTRKMNN YNLQNLFSVT LRDSGEVALI DGDSKQIINI
VKTGYAVHIS RMSASGRYLY VIGRDARLNL IDLWLPKPDN VAEVKIGLEA RSVETSKYKG
YEDKYAVAGS YWPPQYVIME GDTLKPLKVV STRGMTVDNE YHPEPRVASI VASHFRPEFV
INAKETGKIL MVDYSDLKNL KTTTIDSAKF LHDGGFDSTG RYFLVAANAS NKIAVVDTKE
DKLAALVDVG KTPHPGRGAN FVHPKFGPVW ATSHLGDETI SLIGTDPINH KAQAWKVVET
LKGQGGGSLF IKTNPKSHNL WVDTPLNPDA KLNQSVAVFD TQKLEDGYKV LPIAEWANLK
GEGAKRVVQA EYNQAGDEVW FSVWGTKDGE SALVVVDDKT RKLKTVIKDP RLITPTGKFN
AHNTQHDVY