| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3020 |
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| Symbol | |
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| ID | 4039848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 3279450 |
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| End bp | 3280037 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637978420 |
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| Product | TraF peptidase |
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| Protein accession | YP_585162 |
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| Protein GI | 94311952 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0572559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGCAG TTTCCACTTC CGGCACCGCG CCGCACCCTC GCTTGCGCGT GCGCGCTCGC
CTCGTGCTGG CGGGCCTGTC CGCCTGCGGC CTCGCTGCGC TGGCCTGGGC GTCCTTCGTG
CATCCGCTGC CACGCCTGAC CTACAACCCG TCCGACAGCG TGGAGGTCGG CTGGTATCGC
ATCGATCCGC TCGACCATCG CACCAGCTCG CCACCACGTC CGTTGTCGGT AGGCAGCATC
GTGCTGGTGC CGCTGCCTGC CGAGGCTGCC GCGCTCGCTG CGCAGCGCGG CTACCTGCCG
ACGCGCATTC CTCTGCTCAA GCGCGTGGGC GCGGTGGCGC CGCAAGAGGT GTGCATCGCT
GACGGCAAAG TCCGCATCGA CGGCGTGCCT TCAGCCGCCG TGCTGTCTGC CGATCGCTGG
GGCCGGCCGC TGCCATCCCG GCAGCAATGC CACCGCTTGC GGCATGGCGA GCTGTTCCTC
CTCAGTGTGA CCAATCCGGC GTCGTTCGAT AGCCGGTATT TCGGGCCGGT CAGCGCAGCT
TCCGTGATCG GCGTTGCGCG CCCCGTCTGG CTGGAGTCGC GCCCATGA
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| Protein sequence | MTAVSTSGTA PHPRLRVRAR LVLAGLSACG LAALAWASFV HPLPRLTYNP SDSVEVGWYR
IDPLDHRTSS PPRPLSVGSI VLVPLPAEAA ALAAQRGYLP TRIPLLKRVG AVAPQEVCIA
DGKVRIDGVP SAAVLSADRW GRPLPSRQQC HRLRHGELFL LSVTNPASFD SRYFGPVSAA
SVIGVARPVW LESRP
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