| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2981 |
|---|
| Symbol | |
|---|
| ID | 4039809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 3240866 |
|---|
| End bp | 3241840 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637978381 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_585123 |
|---|
| Protein GI | 94311913 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGAAC CTGACGGCGG GAAAACCGCA ATTTTAGCAG AAGCAGGGGG AATTCCCGGG
ACGGATCCGG CACTCCGAAG GGGGACTCAG GCCTGGACCG AATGGTTGAT ACCCGGCGTC
GGCACCACGC TAGGCGAAAT CACATTGCTA GCGGCCGCGT GCAGCCCCTA TCAGCAGATA
GAAATCGGGG AAAGCGCACA TTTTGGCCGG ATCTTCCGGC TCGATGGCCG CGTGATGAGC
ACCGAAGCCG ACGCCTGGAT CCAGCACGAG CTGATGGTGG CCCCAATGGC GGCCACCCAT
GGCGCGCCGC GCAGCGCGCT GGTGGTGGGC GGCGGCGACG GCGGATCGGC ATTCGAACTG
CTGCGTATCC CCACCATGCG AGAGGTAGTG GTGGCCGAAC TCGACGGCGA GGTGGTGCGG
CTGGCGCGCG AGTGGTTGCG CGGCATCCAC CAGGGCGCGC TCGACGAACC AGGCGACCCG
CGCCTGAGCC TGGCGATCGG CGAAGGACTC GGCCTGATGG AAGCCTTCGC GCGCGCCGGA
CGCCAGTTCG ACCTGATCGT CTATGACCTG ACCGAAGCTG ACGACGGCAG CCCCGCCGCC
GCCCTGTTCT CCCCGCATGG CCTGCATACC GCGCGCCGCT GCCTGGCGCC CGGCGGCGCG
ATGTCGCTGC ACCTGGGGCC CCCGCTGCAT CGGCCGGAAA CGGCGCGGCG GCTGCTGGCA
CGGCTACGGC ATGTGTTCCG GCATGTCGCG CCACTGACGA CCTTCGTCCC GGCCTATGGC
GCGCTGTGGG GCATTGCGCT GGCCAGCGAC GCGCTCGATA TCGCCGCGCA GCCCGCTGAC
AAGATCGCAA CGCGTCTGCA GCAGTGGCAA CTCGAACACA AGCTGCGGGC CTATCACGCG
TACCTGCACC CTGCCCTGTT CGTCCATCCG CGGCACGTGC AGGCGATCTT CGACAGCGGC
AGCCGTCCCG CGTAA
|
|---|
| Protein sequence | MREPDGGKTA ILAEAGGIPG TDPALRRGTQ AWTEWLIPGV GTTLGEITLL AAACSPYQQI
EIGESAHFGR IFRLDGRVMS TEADAWIQHE LMVAPMAATH GAPRSALVVG GGDGGSAFEL
LRIPTMREVV VAELDGEVVR LAREWLRGIH QGALDEPGDP RLSLAIGEGL GLMEAFARAG
RQFDLIVYDL TEADDGSPAA ALFSPHGLHT ARRCLAPGGA MSLHLGPPLH RPETARRLLA
RLRHVFRHVA PLTTFVPAYG ALWGIALASD ALDIAAQPAD KIATRLQQWQ LEHKLRAYHA
YLHPALFVHP RHVQAIFDSG SRPA
|
|---|
| |