| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2971 |
|---|
| Symbol | holA |
|---|
| ID | 4039799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 3229087 |
|---|
| End bp | 3230157 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637978371 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_585113 |
|---|
| Protein GI | 94311903 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTCA AGCTCGACGG ACTCGAGGCA CATCTGAGGC AGGCGCAGGC CAAGGGCCTG
GCGCCGCTTT ACGTCGTTCA CGGCGACGAG CACCTGCTGG TGCTGGAGGC GGTAGATCGC
CTGCGCCGCG CTGCGCGAGA GGCCGGTTTC TCCGAACGCG ACGTGCTGGT GGCCGAACGT
GGCTTCCAGT GGGGGCAGGT CATCGAGGCC CAGCAGTCGA TGTCGCTGTT CGGCGACCGC
AAGATCGTCG AGTTGCGTAT TCCATCGGGC AAGCCGGGCA AGGACGGCGG CGAGGCGTTG
CGCGCCGTGG CCGCCCAGCC GTCGCCGGAT GTGGTGATGC TGGTCACACT GCCGCGCCTG
GATTTCGCCA CGACGAAATC GGCCTGGTTC CAGGCATTGG AGTCGGCGGG GGTGTCGATC
AAGGTCGATG CCGTGGACCG CACGCGGCTG CCCGCCTGGG TGGGCGAACG ACTCGGCCTG
CAGCAGCAGC GGGTGGAGCC GGGCGAGCCA GGGCGGCGCG CGCTGCAGTT CATCGCCGAA
AAGGTCGAGG GCAACCTGCT GGCCGCGCAT CAGGAAATCC AGAAGCTCGG CCTGCTTTAT
CCGCCCGGCG CGCTGACCTT CGACCAGGTT CAGGACGCGG TGCTGAACGT GGCCCGCTAC
GACGTGTTCA AACTGTCCGA AGCCATGCTC GGCGGCGACG TGCCGCGCCT GGTGCGTATG
CTCGAAGGGC TGCGTGGCGA GGGCGAGGCT ACGGTGCTGG TGCTGTGGGC GCTGACCGAG
GAAATTCGCG TATTATCCAA GGTCCGGCAA GGCTTGGCGG GCGGCAAGCC GGCGGGCGTG
CTGATGCGCG AACTGCGCGT CTGGGGCCCG CGCGAGCGGC TCGTACCACA GGCCGCGCAA
CGGCTGTCGA TGCCGCAACT GGAAGCCGCG CTTGCCATGG CCGCGCGGCT GGACCGGCAG
GTCAAGGGCC TGTCCGACCT GCCAGGCGCT GGCGGAGCGG CCGGTGCGTT ACCAGCCGAG
CCATGGGACG GCCTGATGCA GCTTGCGCTG ATGATCGCCA GACCCGCATG A
|
|---|
| Protein sequence | MQLKLDGLEA HLRQAQAKGL APLYVVHGDE HLLVLEAVDR LRRAAREAGF SERDVLVAER
GFQWGQVIEA QQSMSLFGDR KIVELRIPSG KPGKDGGEAL RAVAAQPSPD VVMLVTLPRL
DFATTKSAWF QALESAGVSI KVDAVDRTRL PAWVGERLGL QQQRVEPGEP GRRALQFIAE
KVEGNLLAAH QEIQKLGLLY PPGALTFDQV QDAVLNVARY DVFKLSEAML GGDVPRLVRM
LEGLRGEGEA TVLVLWALTE EIRVLSKVRQ GLAGGKPAGV LMRELRVWGP RERLVPQAAQ
RLSMPQLEAA LAMAARLDRQ VKGLSDLPGA GGAAGALPAE PWDGLMQLAL MIARPA
|
|---|
| |