Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_2883 |
Symbol | |
ID | 4039711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 3135681 |
End bp | 3137381 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637978283 |
Product | RNA-directed DNA polymerase |
Protein accession | YP_585025 |
Protein GI | 94311815 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3344] Retron-type reverse transcriptase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.127165 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCAT TGATCCGTGA GGATGAATCT GCGCCCTCCG GCATCCCGCA GCGATGGGGC GACATCAATT GGCGCCGCGT CGAACGGAAT GTTCGGGCAA TGCAGATTCG AATTGCGAAG GCAACACAGG AAGGGGATTG GCGCAGGGTG AAAACCTTGC AACGGTCCCT GACCCGCTCG TTTTCTGCCA AGGCATCGGC GGTAAGGCGA GTGGCGATGA ACCAAGGAGC GCGGACGGCT GGTGTCGACC GCGTTGCGTG GGACTCGCCT GAAGCTCGAT GGGAATCCAT TGGGAGGTTG AAGCGCCGGG GGTATCGTCC GCTGCCGTTA AGGCGGGTGT ACATCCCCAA GGCGAATGGG AAGGAACGCC CCTTGGGCAT TCCAACTCTG CACGACCGAG CCATGCAGGC GCTATACCTG CTGGCGCTGG AGCCGGTGTC CGAGGGGACG AGCGATCCGA ACTCTTACGG GTTTCGGATT AATCGTTCGA CTGCGGATGC CATGTCCCAG CTGTTTGTCT CCTTGTCCAA AAAGGCTTCG GCCCAATGGG TGCTGGAGGC AGACATTAAA GGATGCTTCG ACCATATCAG CCACGACTGG CTGGAGCGCA ATGTCCCCAT GGACAAAGCG ATCCTTCGGA AGTGGTTGAA GGCTGGCGTG GTATTTCAAA GCCAGTTTCA GGCGACCGAT GCTGGAACAC CACAGGGGGG CATCATTTCC CCAACCTTGG CCAACGTGGC ACTGAATGGA CTGGAACGTG ACCTGATGAA GTTCTTACGA ACGAAACTCG GGACTGTCCA GGCCAACAGG CTAAAGGTGA ATGTCGTGCG GTACGCGGAC GACTTCGTGA TCACCGGCAA TACGCCGGAA GTTTTGGAGC ACGAAGTGAA GCCGTGGGTA GAACAGTTCC TAGCAGTACG GGGACTCACT CTTTCCCCGG AGAAAACGCG AATCGTGAAC ATCGCCGATG GCTTTGACTT CCTTGGGTGG AATTTCCGGA AGTATTCGGG AACGCTGCTC ATCAAGCCGA GCAAGAAGAA CGCACTAGCG TTCTATCGCA GGGTCAAGGA GGTTATCAGG ACACACCATG GGAAAAAGCC GGAGGATCTG ATCCGAACGC TGAACCCGAT GCTGAGGGGT TGGGCACAGT ATCACGGCCC AGTGGTTGCA AAGGCGGCGT TCACCCGAAT GGAGCACCTG ATCTTCAGGT GTCTATGGAG GTGGGCAAAA CGGCGACACC GAGGGAAGAA TACCGAGTGG GTGCGGAAGA AGTACTTTGC CTCAATCGGA ATGCGGAACT GGGTGTTTGG AACCAACGTT TTGGGTAAGG CTGGCGAACG CTACTGGATG GAGTTGTATT CGATACCGAG TACGCCTATT CGGAGGCACA AGAAGGTTCG AGGGGACTAC AACCCCTTCG ACCCAGCGCA GGAAATGTAT GGCGAAACGC TGCGGCAGGA ACGCATGGCA GAAAGCATGT CGTACCGAAA GCAGTGGGCA AAGCTGTTCA TGTCCCAGCG GGGCTTATGC GCGGTATGCC AAGGCAAGAT AACCAAAGAG ACAAGATGGC ATGACCATCA CATCGAACCA CGGGTTTCCG GTGGCTCGGA CGCTCTAGGG AATCGAGTTC TGGTGCACCC CGACTGTCAT GTCCAAGTTC ACTCCTATGG TCAAGTTGCA GTGAAGCCGG TGTTTGATTA A
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Protein sequence | MEALIREDES APSGIPQRWG DINWRRVERN VRAMQIRIAK ATQEGDWRRV KTLQRSLTRS FSAKASAVRR VAMNQGARTA GVDRVAWDSP EARWESIGRL KRRGYRPLPL RRVYIPKANG KERPLGIPTL HDRAMQALYL LALEPVSEGT SDPNSYGFRI NRSTADAMSQ LFVSLSKKAS AQWVLEADIK GCFDHISHDW LERNVPMDKA ILRKWLKAGV VFQSQFQATD AGTPQGGIIS PTLANVALNG LERDLMKFLR TKLGTVQANR LKVNVVRYAD DFVITGNTPE VLEHEVKPWV EQFLAVRGLT LSPEKTRIVN IADGFDFLGW NFRKYSGTLL IKPSKKNALA FYRRVKEVIR THHGKKPEDL IRTLNPMLRG WAQYHGPVVA KAAFTRMEHL IFRCLWRWAK RRHRGKNTEW VRKKYFASIG MRNWVFGTNV LGKAGERYWM ELYSIPSTPI RRHKKVRGDY NPFDPAQEMY GETLRQERMA ESMSYRKQWA KLFMSQRGLC AVCQGKITKE TRWHDHHIEP RVSGGSDALG NRVLVHPDCH VQVHSYGQVA VKPVFD
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