| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2606 |
|---|
| Symbol | |
|---|
| ID | 4039432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2833754 |
|---|
| End bp | 2836321 |
|---|
| Gene Length | 2568 bp |
|---|
| Protein Length | 855 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637978007 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_584752 |
|---|
| Protein GI | 94311542 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.10712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.319028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGG CCAAAGCAAC CGAAGGGGTA GCCGTGAAGG CGCCCTCCAA AGCTCCCCAA
TCAGGGAGCG GCAAGGCGTC CGTGAAAACA ACGGCGGCGA AGACATCGAC CGCGTCAGTC
AGGACGACAT CAGCCCGGTC TGCGCCAGCA AAATCCGCGC GGAGCGCAAC TGCGCCCGCC
GGATCCACTT CCGCCAGGAA TCGCACATCC GAAAATACAA AGCCCTCGAC TTCGGCACGC
GAGAGCGGCA AGAGCGCCAA TACAAGCGGC AAGAGCGCCG CTGCACCAGT GAAAGGCAAG
AGTATCACCG TGGCGAAACA GCAGAATACC GAAGTCGAGA GCAAGCGTGC GGCAACGACG
GCCGGCACAC GGAGTGGAGG CGCCAAGGCA GGCACCACCG CTACCGCGAC GCCCAAGGCC
CGTGCCGCGA CTCCCGCACC CGTTGCATCC GAGCGTCCCG CCGCTCCGGC CGTCAAGCCG
GAGCCGAAGA AGCGTGGCCG CAAGCCCAAG GCCGAGATGC AGCAAGACGA CAGCACCATC
GAAGACGTGA CTGAAGAGTT TTACGACAAC GACGCGCCGG CTACCCCTGC CGCTGCGCCC
AAGACCGAAA AGCAGAAAGC CAAGGACCGC AAGGCCAAGG AAAAGGCGCT GCTCAAGGAA
TTTGCCTCGT CGAATCAGGC TGGTAGCGAG GAAGAGCTCG AGATCCGTCG CCAGAAGCTC
AAGGCGCTGA TCAAGCTCGG CAAATCGCGT GGCTACCTGA CTTATGCGGA AATCAACGAT
CACCTGCCGG ACGACATGGT CGATTCGGAA ACGATCGACA CGCTGGTCGC CACGCTGAAC
GACATCGGTA TCGCCGTCTA CGAACAGGCG CCGGATGCCG AGACGCTGCT GCTCAACGAC
AACGCACCGT CCGCCACGAG CGAGGAAGAG GCCGAGGAAG AAGCCGAAGC CGCCCTGTCG
ACCGTGGACT CCGAATTCGG CCGCACCACC GACCCGGTCC GCATGTACAT GCGTGAAATG
GGTACCGTGG AACTGCTGAC GCGCGAAGGC GAAATCGAAA TCGCCAAGCG CATCGAAGCG
GGCCTGAAGG ACATGGTGAT GGCGATCTCG GCCTGCCCGG TCACGATCTC CGAAATCCTG
GCCAGCGCCG AGCGCGTGGC GAACGAAGAG ATCAAGATCG ACGAGTTCGT CGATGGCCTG
ATCGACCCGA ACGCAGAGGA AGTCCAGGAC AACTCCCCGG CCCAGGCGGT AGCCGCCGAT
GACGAGGACG AGGATTCGGA CGAAGACGGC GACGACGGCG AAGAGGAAGA CGACGAAAGC
GGCGGTGGCG CCGGTGCGTC GGCTCGCCAG CTCGAGGAAC TGAAGGTTGC CGCGCTGGAA
AAATTCCGCG TGATCGCCGA GCAGTTCGAC AAGATGCGCC GTGCCTTCGA AAAGGAAGGC
TACAAGTCGA AGCCGTACGT GAAGGCCCAG GAAGCTATCC AGGCCGAACT GATGAGCATT
CGCTTCACCG CGCGTAACGT CGAGCGTCTG TGCGACACGC TGCGTGGCCA GGTGGACGAA
GTGCGCAAGC TGGAACGCGC CATCCTGAAT ATCGTCGTCG ACAAGTGCGG CATGCCGCGC
GCCGACTTCG TGGCCCGTTT CCCGGGCAAC GAGACGAACC TGGACTGGAT CCAGACCATC
GTGGCCGACA ACAAGTCGTA CAGCACGATC GTCGAGCGTA ACGTGCCGGC CGTGCACGAG
CTGCAGCAGA AGCTGATCGA CCTGCAGTCG CGCGTGGTGC TGCCGCTGAA GGAACTGAAG
GACGTCAATC GCAAGATGTC CGAAGGCGAG AAGCGCGCCC GCGAAGCCAA GCGTGAAATG
ACCGAGGCCA ACCTGCGTCT GGTGATCTCG ATCGCGAAGA AGTACACGAA CCGCGGCCTG
CAGTTCCTGG ATCTGATCCA GGAAGGCAAC ATCGGCCTGA TGAAGGCGGT GGACAAGTTC
GAATACCGTC GCGGCTACAA GTTCTCCACG TACGCCACGT GGTGGATTCG CCAGGCCATC
ACGCGCTCGA TCGCCGACCA GGCTCGTACC ATCCGTATTC CGGTTCACAT GATCGAAACG
ATCAACAAGA TGAACCGGAT CTCGCGCCAG ATCCTGCAGG AAACCGGCAA CGAGCCGGAT
CCGGCAACGC TGGCTGAGAA GATGGAGATG CCCGAGGACA AGATCCGCAA GATCATGAAG
ATCGCCAAGG AACCGATCTC CATGGAAACG CCGATCGGTG ACGACGACGA TTCGCATCTG
GGCGACTTCA TCGAAGACAC GAACACGCTG GCCCCGGCCG AGGCTGCGCT GGATGGCTCC
ATGCGCGACG TGGTCAAGGA CGTGCTCGAC AGCCTGACGC CGCGCGAAGC CAAGGTGCTG
CGCATGCGTT TCGGCATCGA AATGAGCACC GACCACACGC TCGAGGAAGT CGGCAAGCAG
TTCGACGTGA CGCGCGAACG TATCCGCCAG ATCGAGGCAA AGGCACTGCG CAAGCTGCGC
CACCCGAGCC GCTCCGACAA GCTGAAGAGC TTCCTGGAAG GCAACTAA
|
|---|
| Protein sequence | MAKAKATEGV AVKAPSKAPQ SGSGKASVKT TAAKTSTASV RTTSARSAPA KSARSATAPA
GSTSARNRTS ENTKPSTSAR ESGKSANTSG KSAAAPVKGK SITVAKQQNT EVESKRAATT
AGTRSGGAKA GTTATATPKA RAATPAPVAS ERPAAPAVKP EPKKRGRKPK AEMQQDDSTI
EDVTEEFYDN DAPATPAAAP KTEKQKAKDR KAKEKALLKE FASSNQAGSE EELEIRRQKL
KALIKLGKSR GYLTYAEIND HLPDDMVDSE TIDTLVATLN DIGIAVYEQA PDAETLLLND
NAPSATSEEE AEEEAEAALS TVDSEFGRTT DPVRMYMREM GTVELLTREG EIEIAKRIEA
GLKDMVMAIS ACPVTISEIL ASAERVANEE IKIDEFVDGL IDPNAEEVQD NSPAQAVAAD
DEDEDSDEDG DDGEEEDDES GGGAGASARQ LEELKVAALE KFRVIAEQFD KMRRAFEKEG
YKSKPYVKAQ EAIQAELMSI RFTARNVERL CDTLRGQVDE VRKLERAILN IVVDKCGMPR
ADFVARFPGN ETNLDWIQTI VADNKSYSTI VERNVPAVHE LQQKLIDLQS RVVLPLKELK
DVNRKMSEGE KRAREAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF
EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ ILQETGNEPD
PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDTNTL APAEAALDGS
MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR
HPSRSDKLKS FLEGN
|
|---|
| |