| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2519 |
|---|
| Symbol | |
|---|
| ID | 4039342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2735047 |
|---|
| End bp | 2737377 |
|---|
| Gene Length | 2331 bp |
|---|
| Protein Length | 776 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637977918 |
|---|
| Product | DNA topoisomerase IV subunit A |
|---|
| Protein accession | YP_584665 |
|---|
| Protein GI | 94311455 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAC CAGACATTAC GTTTCAGGCC GACGAGCCTG CCGATTCGCT GACGCTTGCT
CGCTACGCCG AGCGCGCCTA TCTCGACTAC GCCGTGAGCG TGGTCAAGGG CCGCGCGCTG
CCCGAAGTGG CCGACGGCCA GAAGCCCGTG CAGCGCCGCA TCCTCTTCGC CATGCAGGCG
ATGGGCCTGC GTGCCGATGC CAAGCCCGTG AAGTCGGCCC GTGTGGTCGG CGAGGTGCTC
GGTAAATTCC ACCCGCACGG CGACCAGTCC GCCTATGACG CCCTGGTGCG CCTGGCGCAG
GACTTCTCGC TGCGCTATCC GCTGATCGAC GGCCAGGGCA ACTTCGGCTC GCGCGATGGC
GATGGCGCGG CGGCCATGCG TTACACGGAA GCCCGCCTGA CGCCGATCTC GCGCCTGCTG
CTCGATGAGA TCGACATGGG CACGGTGGAC TTCCTGCCGA ACTACGACGG TTCGGAAGAA
GAGCCGAAGC TGTTGCCCGC GCGACTGCCG TTCGTGCTGC TGAACGGCGC ATCGGGCATC
GCGGTGGGTA TGGCCACGGA AATTCCGCCG CACAATCTGC GCGAAGTGGC AGGTGCCACG
GTGGCGATGA TCCGCAACCC GAATATCTCG CTAGCGGACC TGCTGGCCCT GATGCCGGGG
CCGGACTACC CGGGCGGCGG CCAGATCATT TCGCCGGCGT CGGAGATCGC CCAGATCTAC
GAAAGCGGCC GTGGCAGCCT GAAGGTGCGC GCGCGCTGGA CCATCGAGGA AATGGCGCGG
GGCCAGTGGC AGATGGTGGT GACCGAACTG CCGCCGGGCA CGTCGGCGCA GAAGGTGCTC
GAGGAAATCG AGGAAATCAC CAACCCGAAG ATCCGCACCG GCAAGAAGGC GCTGACGCCC
GAGCAGACCC AGCTCAAGAC GACGATGCTG TCCGTGCTCG ACGCGGTGCG CGACGAGTCG
GGCAAGGATG CGCCGGTTCG CCTGGTGTTC GAGCCCAAGA GCAAGAACAC CGAGCAGCAG
GACTTCATCC AGACGCTGCT CGCGCATACG AGCCTGGAAT CGGGTGCGCC GATCAACCTG
GTGATGATCG GCACCGATGG CCGTCCGCGT CAGAAGGGGC TGCAGGAAAT CCTGCGCGAG
TGGATCGAGT TCCGCTTTGC CACGGTGACG CGCCGCACGC GCTTCCAGCT GACCAAGGTA
GAGGACCGCA TCCACATCCT GGAAGGCCGG ATGCTGGTGC TGCTGAACAT CGACGAGGTG
ATCCGCATCA TCCGCGAAAG CGACGAGCCG AAGCCCGCGC TGATCGAGGC GTTCCGCCTG
AGCGACCGCC AGGCAGAGGA CATCCTGGAA ATCCGCCTGC GCCAGCTGGC GCGCCTGGAA
GCGATCAAGA TCGAACAGGA ACTGGCGAAG CTGCGCGACG AGCAGGCCGA ACTGGACGTG
CTGCTGAAGT CCGAGACGAT GATGCGCCGT CGCATCATCA AGGAAATCGA GCAGGACGCG
AAGCAGTACA GCCCGGAAGA CAAGGATCCG CGCCGCACGC TGATCCAGGA GGCCAGCCGC
GCCGCCGCCG AGGTGAAGGT GATCGACGAG CCGGTGACGG TCATCGTGTC GGGCAAGGGC
TGGGTGCGCA CGCGCCAGGG CCACGGCCAC GATGCGTCGC AGTTCACGTT CAAGGCGGGC
GACAACCTCT ACGGCACCTT CGAATGCCGC ACCATCGACA CGTTGCTGGC TTTCGGCAGC
AATGGCCGCG TGTACTCGGT GGCCGTGTCG GGCCTGCCGG GCGGGCGAGG CGATGGCGTG
CCTGTGACGA CGCTGATCGA CCTGGCCGCC GGCACGCAGA TCGCGCATAC GTTCGCCGGT
GCCGCCGAGC AACGGATGCT GATCGCCACG GCGGGTGGCA ATGGCTTTGT GACCAAGGTT
GGCGACATGA TCGGCCGCCA GAAGGCAGGC AAGGCCTTCG TGACGCTGGA CGAGGGTGAC
ACGCTGCTGG CCCCGACGCC GATTGGTGAG GAGTGCACGC ATGTGGCCTG CTTCTCGGCC
AATGGCCGCC TGCTGCTGGC GGGGCTGGAC GAGGTCAAGG TGCTGTCGGC CGGTGGCCGC
GGCGTGATCC TGATGGAGCT GGAACCGAAG GAAACGCTGA TGCAGGCGGT GGCCGTGGGC
GCGCCGGGCC TGATGATCTC CGGCATCGGC GTTCGTGGCG GCAAGGTGCC GCCGCAGAAG
CTGGCCGGCA AGACGCTGAT CCCTTACGTG GGCAAGCGCG CCCGCAAAGG CAAGGCGATC
GAGCCGCGCC TCAAGGAAGT GAAGATCGAG CCGGTAAAGG TTGGGGAGTA A
|
|---|
| Protein sequence | MDQPDITFQA DEPADSLTLA RYAERAYLDY AVSVVKGRAL PEVADGQKPV QRRILFAMQA
MGLRADAKPV KSARVVGEVL GKFHPHGDQS AYDALVRLAQ DFSLRYPLID GQGNFGSRDG
DGAAAMRYTE ARLTPISRLL LDEIDMGTVD FLPNYDGSEE EPKLLPARLP FVLLNGASGI
AVGMATEIPP HNLREVAGAT VAMIRNPNIS LADLLALMPG PDYPGGGQII SPASEIAQIY
ESGRGSLKVR ARWTIEEMAR GQWQMVVTEL PPGTSAQKVL EEIEEITNPK IRTGKKALTP
EQTQLKTTML SVLDAVRDES GKDAPVRLVF EPKSKNTEQQ DFIQTLLAHT SLESGAPINL
VMIGTDGRPR QKGLQEILRE WIEFRFATVT RRTRFQLTKV EDRIHILEGR MLVLLNIDEV
IRIIRESDEP KPALIEAFRL SDRQAEDILE IRLRQLARLE AIKIEQELAK LRDEQAELDV
LLKSETMMRR RIIKEIEQDA KQYSPEDKDP RRTLIQEASR AAAEVKVIDE PVTVIVSGKG
WVRTRQGHGH DASQFTFKAG DNLYGTFECR TIDTLLAFGS NGRVYSVAVS GLPGGRGDGV
PVTTLIDLAA GTQIAHTFAG AAEQRMLIAT AGGNGFVTKV GDMIGRQKAG KAFVTLDEGD
TLLAPTPIGE ECTHVACFSA NGRLLLAGLD EVKVLSAGGR GVILMELEPK ETLMQAVAVG
APGLMISGIG VRGGKVPPQK LAGKTLIPYV GKRARKGKAI EPRLKEVKIE PVKVGE
|
|---|
| |