| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2497 |
|---|
| Symbol | |
|---|
| ID | 4039320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2711585 |
|---|
| End bp | 2712517 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637977896 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_584643 |
|---|
| Protein GI | 94311433 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00914951 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCG CCTTGAGCGC GTTGTATTCC TCCATGACGC TTTTGAAACG CAAATCTATC
GAGGCCGTGG CCTCGCGCCG CCCCGCGCGC GGCGAACGTG AAACCTCGCG CAGGAAGCTG
TCCGGCGACG CCGGCGATGT CGACAATGCC GGCGAGAAGC GCATGACGCC GCGCTTCGCG
CCGGTGACGT TCTCGGAAAT GGATGGCGTG CGCTATCTCC ATTTCGGCAC CGAGTGGGTG
CAGGGCGCGA TGCGCCTGCG CAAGCCCGAT GCCATCGAAC TCGAGTACGC CCAGCAGATG
ATGGCCTGGC TGCTGTTCCT GTCGCCGTCG GCTGCGGATT TCCACGTGGC GCAACTGGGC
CTGGGCGCCG CCGCGCTGAC CAAGTTCTGC CATCGCCAAT TCGCCCGTGC GAAGGTAACG
GCCGTCGAGT TGAATCCCGC CGTGATCGTG GCCGGCCGCA GCATGTTCGG CCTGCGCGAG
GACGATGCGC GCCTGTCCGT GCGCGAGCAG GATGCATGGG ACTTCGTGAT GGATGGCGCG
CAGACAGCGT CGATCGACGC GTTGCAGGTC GACCTGTACG ACGCCACCGC GCGTGGCCCG
GTCCTCGATA CCACGGCGTT CTATCGTGCC TGCCGTCGCG TGCTCAAGGC GCCTGGCGTG
ATGACGATCA ACCTGTTCGG AGACCACGAG AGTTTCCCGA AGAACATCGT GCGTATCTGC
GACGCGTTCG ACAATCGCGT GCTGGTGTTC CCCGAAGTGC ATGACGGCAA CATCATCGCG
CTGGCGTTCA ACGGGCCGGC GATCGACGTG TCTTGGGAAA CGCTGGAGGC GAGGGCGGAA
GTGGTGGAGG CCACCACGAA GCTGCCGGCG AAGGACTGGG TGAAGAAGCT GCGCGCGGCG
AATGCGCGGC AGGAAGAGCG GCTGGCGATC TGA
|
|---|
| Protein sequence | MIRALSALYS SMTLLKRKSI EAVASRRPAR GERETSRRKL SGDAGDVDNA GEKRMTPRFA
PVTFSEMDGV RYLHFGTEWV QGAMRLRKPD AIELEYAQQM MAWLLFLSPS AADFHVAQLG
LGAAALTKFC HRQFARAKVT AVELNPAVIV AGRSMFGLRE DDARLSVREQ DAWDFVMDGA
QTASIDALQV DLYDATARGP VLDTTAFYRA CRRVLKAPGV MTINLFGDHE SFPKNIVRIC
DAFDNRVLVF PEVHDGNIIA LAFNGPAIDV SWETLEARAE VVEATTKLPA KDWVKKLRAA
NARQEERLAI
|
|---|
| |