Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_2439 |
Symbol | |
ID | 4039261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 2646911 |
End bp | 2647927 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637977837 |
Product | ribosomal large subunit pseudouridine synthase C |
Protein accession | YP_584585 |
Protein GI | 94311375 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.122309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAAATGA ATGAGTTACG CCATCAAATT GCAACGGAGC CGCAATCGCG CCCCAGCGGG CTCCAAGTGG CGTACGTGAC AGTCGACGAA AGTTCGGAAG GGCAGCGCAT CGACAACTTC CTGTTGAAGG TGGCCAAGGG CGTGCCCAAA AGCCACATTT ATCGCGTGTT GCGCTCGGGC GAAGTGCGCG TCAACAAAGG TCGGGTCGAC GCCACTTATC GGCTGCAGAA CGGGGATGTG GTGCGTATCC CGCCGATGCG CGTGGCGGAG AAGGCTGCCC CGACCGGTGG TTTCGTGCCC GCCGGCGAGT TTCCTGTGCT TTTTGAGGAT GCCGCGCTGC TCGTGATCGA CAAGCCGGCC GGCGTGGCCG TGCATGGCGG GTCTGGGGTG GCCTTCGGTG TGATCGAACA GCTACGCCGC GCCAGGCCGG AGGCGAAGTT CCTCGAGCTG GTCCACCGGC TCGATCGGGA AACGTCCGGA ATTTTGGTGC TGGCGAAGAA GCGTTCCGTG CTGGTGCACC TGCACGAGCA GATTCGTGGC AACGGCATGG ACAAGCGGTA TTTCGCCTGC GTGGCGGGCG AGTTTCCGAA CACGCGCCAG CATGTGAAGC TACCTCTATA TAAATACAGC ACGCCGGACG GCGAACGCCG CGTGCGTGTG CAGGCGGACG GGTTGGCGTC ACATACGGTC TTCAATCGCA TGGAGGCCTT CGATGGCTAC ACGTTGCTGG AGGCCGAACT GAAGACCGGG CGGACGCACC AGATTCGCGT GCATCTGCAA TCGATTGGCT TCCCGATCGT TGGTGATGAT AAATATGGCG ATTTTGCGCT CAATAAGGCG CTTTCTCGCA GCGGCACCAA GCCGGGGCTG AAACGCATGT TCCTGCATGC GCACCGGCTC ACGCTGACAC ATCCGGTCAC CGGCGCGCCG ATGACAGTGT CCGCGCCATT GCCTGCCGAG TGTGTTGAAT TTCTGCAACA ATTGCGGCAA GGGCGACCAG CGCGCGACGC GGACTGA
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Protein sequence | MKMNELRHQI ATEPQSRPSG LQVAYVTVDE SSEGQRIDNF LLKVAKGVPK SHIYRVLRSG EVRVNKGRVD ATYRLQNGDV VRIPPMRVAE KAAPTGGFVP AGEFPVLFED AALLVIDKPA GVAVHGGSGV AFGVIEQLRR ARPEAKFLEL VHRLDRETSG ILVLAKKRSV LVHLHEQIRG NGMDKRYFAC VAGEFPNTRQ HVKLPLYKYS TPDGERRVRV QADGLASHTV FNRMEAFDGY TLLEAELKTG RTHQIRVHLQ SIGFPIVGDD KYGDFALNKA LSRSGTKPGL KRMFLHAHRL TLTHPVTGAP MTVSAPLPAE CVEFLQQLRQ GRPARDAD
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