Gene Rmet_2422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_2422 
Symbol 
ID4039244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp2631803 
End bp2633308 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content64% 
IMG OID637977820 
Productpeptidase S1C, Do 
Protein accessionYP_584568 
Protein GI94311358 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.320344 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTCCA GATCTCCAGC CCTGGCAAGG GTCGTGGTCA TGGTGGCCAT GCTCGTGTTC 
GGTCCGGCTG TTTCCGAATT GGGGCACGCT CAGGCGGCGG CCCAGAACTA CAACCTGCCC
GACTTTACCG ACTTGGTCGA GAAGGTGAGC CCGGCGGTTG TGAATATCCG CACGACAGAG
CGCGTGCGCT CGCGTGGCGG CAATTCCCCC GATGACGACG AAATGGCGGA GTTCTTCCGT
CGCTTCTTCG GCGTGCCAAT GCCCGGAACG CCGGGACAGC CGCGCCGTGG CCAGCCTCCG
CAAGGACAGG GCCAAAGTCA GGGGCAGGGC GAAGAGATGA GCCGGGGCGT GGGTTCCGGT
TTCATCATCA GCCAGGATGG CTACGTGATG ACGAACGCCC ACGTGGTGGC AGAGGCTGAC
ACGATCTACG TGACGCTGCC TGACAAGCGC GAATTCAAGG CCAAGCTGAT TGGTGCGGAC
AAGCGTACCG ACGTGGCGCT GCTCAAGATC GATGCAACGG GTCTGCCACG CCTGCCACTC
GGGGATTCGG ACAAGGTCCG CACTGGCGAG TGGGTATTGG CCATTGGTTC GCCGTTCGGC
CTGGACAGCA GCGTGACCGC CGGTATCGTA TCGGCTAAGG CGCGCGACAC CGGCGACTAC
CTGCCGCTTA TCCAGACTGA CGTGGCGGTG AACCCTGGTA ATTCGGGTGG CCCGCTGATC
AACCTGCGCG GCGAAGTCAT CGGCATTAAT TCGCAGATCT ACAGCCGCAG CGGCGGTTAT
ATGGGCATTT CGTTCGCGAC CCCGATCGAC GAAGCGATGC GTGTGACCGA GCAACTGAAG
GCGACTGGCA AGGTGACGCG TGGGCGGATC GCCGTGGCGA TCGGTGATGT GACCAAGGAA
GTGGCGGACT CGCTGGGCCT TGGGCGCACT CGCGGCGCGC TGGTTGGTAG CGTCGAGCCG
GGCGGTCCTG CCGAAAAGGC CGGTATCGAG GCGGGCGACA TCATCCTGAA GTACAACGGC
CGGGATATTG AGAAGGCTGC GGATCTGCCG CGGATGGTCG GTGACACCAA GCCGGGTACG
CGCGTGCCGA TGCAGGTGTG GCGCAAGGGG CAGACCCGCG AGGTAATGAT CACGGTGGCG
GAGCTTGAGC CCGACACCCC TCGCGCCACG CCGCGCCGCG GCGACAAGCG CGGCGGAGGT
AACGAAGAGG CACCCGCGCC GAAGCCGAAT GCACTGGGCC TGATCGTCAA CGACATCCCC
GAGGCGCGGA TGCGCGAGCT CAAGCTGAAG TCAGGGGTGG AGGTCGACAC GGTTGATGGT
CCGGCCGCTC GCGCCGGGAT CCGTCCGGGC GACATCATCC TGCGACTCGG TGATACCGAC
GTGACCAGTG CGAGGCAGTT CAACGATCTC GTCAAGGGAC TGGACAAGAA CAAGATGGCT
GCCGTGTTCG TGCGCCGCGG CGATGCTACC CAGGTGCTGA CGCTGCGTCC CAATCAGACG
CGCTGA
 
Protein sequence
MISRSPALAR VVVMVAMLVF GPAVSELGHA QAAAQNYNLP DFTDLVEKVS PAVVNIRTTE 
RVRSRGGNSP DDDEMAEFFR RFFGVPMPGT PGQPRRGQPP QGQGQSQGQG EEMSRGVGSG
FIISQDGYVM TNAHVVAEAD TIYVTLPDKR EFKAKLIGAD KRTDVALLKI DATGLPRLPL
GDSDKVRTGE WVLAIGSPFG LDSSVTAGIV SAKARDTGDY LPLIQTDVAV NPGNSGGPLI
NLRGEVIGIN SQIYSRSGGY MGISFATPID EAMRVTEQLK ATGKVTRGRI AVAIGDVTKE
VADSLGLGRT RGALVGSVEP GGPAEKAGIE AGDIILKYNG RDIEKAADLP RMVGDTKPGT
RVPMQVWRKG QTREVMITVA ELEPDTPRAT PRRGDKRGGG NEEAPAPKPN ALGLIVNDIP
EARMRELKLK SGVEVDTVDG PAARAGIRPG DIILRLGDTD VTSARQFNDL VKGLDKNKMA
AVFVRRGDAT QVLTLRPNQT R