| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2385 |
|---|
| Symbol | |
|---|
| ID | 4039205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 2597603 |
|---|
| End bp | 2598226 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637977781 |
|---|
| Product | heme exporter protein CcmA |
|---|
| Protein accession | YP_584531 |
|---|
| Protein GI | 94311321 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
|---|
| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00141503 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000187001 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGC CCATGCTTGA AGCTCTCGAT CTCGCGGGCG TTCGCGGGGA GCGCCGCCTG
TTTGACCATT TGACTTTCCG GATCGTGCCG GGCGAGTGCC TGTCGGTGCA CGGCGAGAAC
GGCAGCGGGA AGACCACGCT ATTGCGAACG CTTGCAGGGT TCGCTACGCC TGCTGCTGGC
AGAGTCTTGT GGAAAGGAAA GCCGCTGCGC AACCAGTGGA GTGAATACCA ACGCGAACTG
GTTTACAACG GCCATGGCAT TGGACTCAAA GAAGACCTGA ATGCCTTGGA CAACCTGCTT
GCCGCGGCCG CCATCGCTGG TGAGCCGGTC ACCACGGAAT GCGTGGAATC AGCGTTGGAC
GAAGTTGGCT TGGCCGAGCA CAGGCACTTG CCGTTCCGGA TGTTGTCACA AGGCCAAAAG
CGTCGTGCAA GCCTGGCTCG ATTGCTCCTC TACAGGAGGA AGTTGTGGAT TCTCGATGAG
CCCTCCACAG CGCTGGACCA ATTCGGTGCG CGATGGCTTG GTGAACTGAT CCATCGGCAC
CAGTCACGCG GCGGCATGGT CGTTCTGACG AGTCACCAGG AGCTGGCCTT GAAAACTTCT
CAGACCGTCC GGATGGGGGC ATGA
|
|---|
| Protein sequence | MTRPMLEALD LAGVRGERRL FDHLTFRIVP GECLSVHGEN GSGKTTLLRT LAGFATPAAG
RVLWKGKPLR NQWSEYQREL VYNGHGIGLK EDLNALDNLL AAAAIAGEPV TTECVESALD
EVGLAEHRHL PFRMLSQGQK RRASLARLLL YRRKLWILDE PSTALDQFGA RWLGELIHRH
QSRGGMVVLT SHQELALKTS QTVRMGA
|
|---|
| |