| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2273 |
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| Symbol | |
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| ID | 4039092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 2495497 |
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| End bp | 2497062 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637977669 |
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| Product | fumarase |
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| Protein accession | YP_584421 |
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| Protein GI | 94311211 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases
[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0060992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00178376 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCCGG GCTGTGTTTC ACCGCTGCCC ATCCCCCACA AAATGACAGT CATCAAGCAA
GAAGACCTCA TCCAGAGCGT CGCCGATTCC CTGCAGTACA TCAGCTACTA CCATCCGATG
GACTACATCA CCAGCCTGGG CCGCGCCTAT GAGCTGGAAA AGAGTCCGGC CGCCAAGGAT
GCGATCGCGC AGATCCTGAC CAACAGCCGC ATGTGCGCCG AAGGCAAGCG CCCGCTGTGC
CAGGACACCG GCATCGTGAC GGTCTTCCTG AAGGTGGGCA TGAACGTGCG CTGGGATGGC
GCCACGATGA GCCTGGAAGA CATGGTCAAC GAAGGCGTGC GCCGCGCGTA CAACGACGTG
GACAACAAGC TGCGCGCCAG CGTGCTGGCC GATCCGGCCG GCAAGCGCAC CAATACGAAG
GACAACACCC CGGCGGTGAT CAACATGTCG ATCGTTCCGG GCGATACGGT GGACGTGATC
GTCGCAGCCA AGGGCGGCGG TTCCGAAGCC AAGTCGAAGT TCGTGATGCT CAACCCGTCT
GACTCGATCG TCGACTGGGT GCTCAAGACT GTCCCGACCA TGGGCGCCGG CTGGTGCCCG
CCGGGCATGC TGGGCATCGG CATTGGCGGC ACGGCTGAAA AGGCCATGCT GCTGGCCAAG
GAAGCCCTGA TGGAGCCGAT CGACATTCAG GACCTGCTCG CCCGCGGCCC GAGCAACCGC
GCCGAAGAAC TGCGCATCGA GCTGTACGAG AAGGTCAACG CACTGGGCAT CGGCGCGCAG
GGCCTGGGCG GCCTGGCTAC CGTGCTCGAC GTGAAGGTGC TGGACTACCC GACCCACGCG
GCCAACCTGC CTGTGGCCAT GATCCCGAAC TGCGCGGCCA CCCGCCACGC GCACTTCACG
CTGGACGGCA GCGGCGTCGC CAAGCTGGAA GCGCCGGACC TGTCGCAATG GCCGAAGGTC
GAGTGGGCAC CGAACACCGA AACGTCGAAA AGCGTTGACC TGAACACGCT GACGCCGGAA
GAAGTCGCCT CGTGGAAGCC CGGCCAGACG CTGCTGCTGA ACGGCAAGAT GCTGACCGGC
CGTGATGCCG CGCACAAGCG CATCGCCGAC ATGCTGGCCA AGGGCGAGAA GCTGCCGATC
GACTTCACGA ACCGCGTGAT CTACTACGTA GGCCCCGTGG ATCCGGTACG TGACGAAGTG
GTTGGCCCGG CTGGCCCCAC CACCGCCACC CGCATGGACA AGTTCACCGA GACGATGCTG
TCGCAGACTG GCCTGATCGC GATGATCGGC AAGGCCGAGC GTGGCCCCAC CGCAATCGAA
TCGATCCAGA AGCACAAGTC GGCCTACCTG ATGGCCGTGG GTGGCGCTGC CTACCTCGTG
TCGAAGGCGA TCCGTGGCGC CAAGGTCCTC GCCTTCGAAG ACCTCGGCAT GGAAGCCATC
TACGAGTTCG ACGTCAAGGA CATGCCGGTG ACGGTGGCCG TGGATAGCTC GGGCACGTCC
GTCCACAAGA CCGGCCCCGC CGAGTGGCAG GCCAAGATCG GCAAGATTCC GGTCGCGACG
GCCTAA
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| Protein sequence | MIPGCVSPLP IPHKMTVIKQ EDLIQSVADS LQYISYYHPM DYITSLGRAY ELEKSPAAKD
AIAQILTNSR MCAEGKRPLC QDTGIVTVFL KVGMNVRWDG ATMSLEDMVN EGVRRAYNDV
DNKLRASVLA DPAGKRTNTK DNTPAVINMS IVPGDTVDVI VAAKGGGSEA KSKFVMLNPS
DSIVDWVLKT VPTMGAGWCP PGMLGIGIGG TAEKAMLLAK EALMEPIDIQ DLLARGPSNR
AEELRIELYE KVNALGIGAQ GLGGLATVLD VKVLDYPTHA ANLPVAMIPN CAATRHAHFT
LDGSGVAKLE APDLSQWPKV EWAPNTETSK SVDLNTLTPE EVASWKPGQT LLLNGKMLTG
RDAAHKRIAD MLAKGEKLPI DFTNRVIYYV GPVDPVRDEV VGPAGPTTAT RMDKFTETML
SQTGLIAMIG KAERGPTAIE SIQKHKSAYL MAVGGAAYLV SKAIRGAKVL AFEDLGMEAI
YEFDVKDMPV TVAVDSSGTS VHKTGPAEWQ AKIGKIPVAT A
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