| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2247 |
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| Symbol | |
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| ID | 4039065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 2460966 |
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| End bp | 2463587 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637977642 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_584395 |
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| Protein GI | 94311185 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0449323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.368764 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGAGAG ACCAGGCAAC ACCTGGTCGC GCACGTAACA CCCGACAAGA ACGAGATAGT
CAAAAAATAA TGCGTACCCA GGCGCTGGAA CAGGCGATCG ATGCCGTGGT CGCGGTCGAC
GCACGCAACC AGATCACCCT CTTCAATGCC GCAGCGGAGG CATTGTGGGG TCTGGAACGA
ACCACCGTGC TAGGCCAGTG CGCGTCCGTC CTGGCGCTTG GCGATCTGCG CGTGGCCAAT
GGCCAGAGCG GTCAGAACCT CGCCATCGCA CGCGCCGATG GCACCCTGCG TCATGTGCGG
CTGCACATCG CCATCTTCGG CACGGACGGC GACTCCAACC CAGGAGCGCC TGCGAAGCAG
TTCGCCGCTT TCCTGCATGA CGACGCCAGC ACCGGCAACG AGCCCGGCGC CACGTTGAGC
CCGCCGGGGC TGCGTATGCT CTCGCTGTGC CTCGACCACG CCGAAAACCC GGTCATGATC
ACCGACGCCC ACGGCACGAT CTGCCACCTG AACGGTGGCT TCACGCGTCT GCTCGGCTAC
GCGAGGCATC AGGCGGTAGG CCGCCGCTGG CAGGATCTGC TAATGCCGAT CAACGCGCGG
CCGGAGCAGA TCCCTTCGTT GCTGGCGCCG CTGGCGGCCG GCCTGCCGCT GCGCAATGAA
GCACTGGTGC CCGACAAGAG CGGGCAGCCG CGCTGGCTAT CGGTCGCGGT CAGTCCGATC
ATGGCGTCGA CGCAAAGTGG CGGACTGGTC AACACGGTCT GGGTCCTGAC CGACATCACG
GCAACCAAGG TACGCGAATC GATCCAGCAC CGCACGCTGG ACGCCCTGGC GCGCGACCTG
CCGACCGCGC AGATCATGAA TGATCTGTGC CGTCGCGTGG AAAGAATGGC ACCGGGCACG
AAGGCCGCTG TCATGCGCGC CTCCAACGGC CATTTGCGGC TGGTGGCGAT GCCATCGGCC
ACCCCCGATC TGCTTGCCGC ATTCGACAGC CTGCAGATCG GCCTGCAGTC GGGCTCCTGC
GGCGCGGCGG CTTTTCTCGG CCACGCCGTG GCCGTAGAAG ACATCGCTCA GGATCCGCGC
TGCGAAACGC TACGCGAAAC GGCGCTTGCC GCCGGCATGG CCGCCACCTG GTCCACCCCC
GTGCGTGCCG CCGACGGGCG TGTGCTGGGC ACCTTCGCGC TGTGCTTCAA CGAGCCACGC
CTGCCGGACG GGTTCCACGA AAACCTTGTG GGTGTTGCCG CCGACCTCTG CGCGCTGGCG
CTGGTGCGCG ACCAGACGCA GGAGCGCATC CACCGCCTGG CGTACTACGA CGCGCTGACC
GGCCTGCCGA ATCGCCAGTT GCTGCTGTCC CGCGCCGACG ATGCCGTGGC GCGCGCCAAC
GCCCATGGCA CCCCGCTCGC CCTGCTGTTC ATCAATCTGA ACAACTTCAA GCGCGTCAAC
GACGTGCAGG GTCACGGCGC CGGCGACCGC TTTCTGATCG AAGTGGCATC ACGGCTGCAG
TTCGCCACTG CCGAACACGC GCGGGATGCC ACCGTCGGCC GGTTGTCAGG AGATGAGTTC
GCCGTACTGC TACCGGGCCA CGGACATGCC GAGGCCCTGG CCATCGCCGA TGAGCTGCTG
CGCGCGCTCG ATCCGCCGAT TACCGTCGCA CACGGCCTGA GCCCTTCGCC TTCAGCCAGC
ATCGGCATCA GCATGCTGAC CGAGCAGACG CGCGACCGAG AAACGCTGCT GCATCATGCC
GACCTTGCGG TCTGCCAGGC CAGGAAGCGC AGTGGCCCGG ACCTCGGCAA CCAGATCTGT
GTGTATGACA CCGTGCTGGC GCGACGCCTT GGCGATCGGC GCATGCTCGA ATGCGAGCTG
CGCGAAGCCA TCGGCAGTGG CCAGTTGCAG ATGCGCTACC AGCCTCAGAT CCATCTGGCT
TCGGGCAACC TTTGGGCGGT GGAAGCGCTG GCGCGCTGGC CGCATCCGCA CCGCGGCGAC
ATCGCGCCCA CGGTGTTCGT GCCGCTGGCC GAAGAATCCG GATTGATCGT GGCGCTCGGA
TACTGGGCCG TGCGCGAAGC ATGTGCACAG CAGGCACGCT GGCGGCGGCG CGGCGCCGCG
GTGCCGGCCA TCTCCGTCAA CCTCTCGCCG CTTTCGATCC GTGACCCAGC GCTGCCGGAC
GTGGTGGCGC AGGCCCTGCG AACGCACGCG CTGCCCGCCG GCGAACTGAC CATCGAGATC
ACGGAAAGCG TGTTCCTCGA TCACACCTCC GAAGCGGAAG CCACGATCGC AGCCCTGCGC
AAGCTTGGCG TGCGCCTGTC GATCGACGAT TTTGGAACGG GATTTTCGAG CCTGAGCCGG
CTCATGCAAT TGCCAGTCGA CGAGATCAAA CTCGACCGGA GTTTCCTGGT GGATCTGGAG
ACCAGCGAGG CCACGCGCAC CCTGGTGGAG GCTGTGATCC GGATTGGCCG CGCGCGGGAT
CTGACCGTGG TGGCCGAGGG GGTCACCAGC GCACTCCAGC GCCAGTTCCT GCTCGACCAA
GGCTGTCACG TAGGCCAGGG ATTCCTGTTC GCCCAGCCAC TGCCGGCCGC GTCCATCGAG
AGATGGCAAC CCCAACCGTC CTGGCCAGGG TTGATGCACT AG
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| Protein sequence | MGRDQATPGR ARNTRQERDS QKIMRTQALE QAIDAVVAVD ARNQITLFNA AAEALWGLER
TTVLGQCASV LALGDLRVAN GQSGQNLAIA RADGTLRHVR LHIAIFGTDG DSNPGAPAKQ
FAAFLHDDAS TGNEPGATLS PPGLRMLSLC LDHAENPVMI TDAHGTICHL NGGFTRLLGY
ARHQAVGRRW QDLLMPINAR PEQIPSLLAP LAAGLPLRNE ALVPDKSGQP RWLSVAVSPI
MASTQSGGLV NTVWVLTDIT ATKVRESIQH RTLDALARDL PTAQIMNDLC RRVERMAPGT
KAAVMRASNG HLRLVAMPSA TPDLLAAFDS LQIGLQSGSC GAAAFLGHAV AVEDIAQDPR
CETLRETALA AGMAATWSTP VRAADGRVLG TFALCFNEPR LPDGFHENLV GVAADLCALA
LVRDQTQERI HRLAYYDALT GLPNRQLLLS RADDAVARAN AHGTPLALLF INLNNFKRVN
DVQGHGAGDR FLIEVASRLQ FATAEHARDA TVGRLSGDEF AVLLPGHGHA EALAIADELL
RALDPPITVA HGLSPSPSAS IGISMLTEQT RDRETLLHHA DLAVCQARKR SGPDLGNQIC
VYDTVLARRL GDRRMLECEL REAIGSGQLQ MRYQPQIHLA SGNLWAVEAL ARWPHPHRGD
IAPTVFVPLA EESGLIVALG YWAVREACAQ QARWRRRGAA VPAISVNLSP LSIRDPALPD
VVAQALRTHA LPAGELTIEI TESVFLDHTS EAEATIAALR KLGVRLSIDD FGTGFSSLSR
LMQLPVDEIK LDRSFLVDLE TSEATRTLVE AVIRIGRARD LTVVAEGVTS ALQRQFLLDQ
GCHVGQGFLF AQPLPAASIE RWQPQPSWPG LMH
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