| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2227 |
|---|
| Symbol | |
|---|
| ID | 4039045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 2440894 |
|---|
| End bp | 2442882 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637977622 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_584375 |
|---|
| Protein GI | 94311165 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.327123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.115705 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCACT CATTGAAGTA CCGGATGGCG ATCGCTGCCG CAATTGTGGT CACGCTGGTA
TTTGTGGCAC GCGCGGGGAT TTCCCAGTGG TACGCCTATG GGCGCCTGAA CGACCTCGTT
CAGAGCCAGC AGGACACACT GGTGAGGCTC GTCGCCAACC AATTGGACGA GAAGCTCGAA
TCACGCGCAG TCGTGCTGCG ACGGCTCGCC CGCAACCTGT CGCCCGTGCT CGACGCGCCC
TCCGCCCGAC TGCGCCAGCT TGCCACCGAC ACCATCGACA TACCGGAGCA ATTCAACGCG
GTCTTCATGG CATGGCCCGA CGGCACACTC GCGTTCAGCA CGGCGGTTCC GGATGGCGTC
AAGATGATGA TCAGCGACCG CGACTACTTC AAGGAAATCC TGCGCGGCTC CCCGTTTGTC
GTTTCGGACC TGCTGCAGGG CAAACACAGC GCCGCCCCCG GCGTCATCCT CGCCGTGCCC
CTGCGGGGAG CGAAGGGTGA ACTGCGCGCA GTCGTCGGCG GCATCCTGAA CCTGTCCGCG
GACAACTTCC TGCGCGAACT GGCCGGCAGC CGCATCGGCC TGACCGGGTT CTATTGCCTG
GTCTCGGCCG GTCCGAATCC ACGCTATGCC ATGCATCCCG ACAGCGCGAA GGTGCTCGCG
CCTGCGCGCG CCTCGGGAGA CTCCTGCGGC GCCGAACGGC CAGCTTCGCG CTGGGAAGCG
CTGGAGCCGC AGCAACCGGT CGTCGCGCGC CACCTGCTGG CATCAAACGG GTGGGAGGTG
ATATCGGTCC TGCCCGCCAA GGAAGCCTAC GGGCCGCTGC TCGAAGCCCG CCAACATGCC
ATCGTCATCG GCGTCGTTTC TCTGATCTTT GCGGCCGCGT TGATGTGGAT GACGATCCGT
TTCCTGCTGG CCCCACTCGA ACACCTGCAT CGCGCCGTCA GGCAACTGGC CACGCGCCCA
TCCGCTGTGG CGGACCTGCT CGTCAACCGC GAGGACGAAA TCGGCGAGCT TGCCGGCGCC
TTCTGCGAGG TCATGCAGCA ACTCTCCGAG CGCGAGGCAG CGCTCAAGGC CGCCAACGAC
AGCGCCGCGG CGAGCGAGAA ACGCTTCGTG GCCATCGCCA ATCATGTTCC CGAGTTCGTC
GCTTTCATCG ATGCCAGCGA GCGGTTCGCG TTCGTCAATC AGGCCTATGC GCGACACTAT
GGCCTGCCGG CCGACCAGAT CACGGGCCTT TCTGTGCGAG AACTCTGGGG CACGCCAGAC
TACGTCGCCA ACAAGCCCTA CCTCGAGCGC GCGCGCACTG GCGAAGTCGT GACCTTCACG
CGAGAAACCT CCGACGGCAC CGCCCGGGAG ATCACCTACC AACCAGCGTG GAACGATACG
CAGGACGTTC TCACCGGCCT GCACATGTTC GCCCGCGATG TGACCGGCGA ACGCCTGAAG
CTGCGCACAC TCGAAGCCCA GACGCTGTCC GATCACCTGA CCGGCCTGCT GAATCGCAAG
GGCTTCGACC GGCGACTGCA GGAAGCCATG GCGCGAGCGG ACTCGGCAGA TCACGGTGCT
GCGCTGCTGC TGGTGGATCT CGACGATTTC AAGGCGGTCA ACGACAGCTA CGGCCACCCG
GTCGGCGACC GCCTGCTGGT CGCTTTCGCC GAACGGCTGC GCACCTGTGT ACGCAGCGGC
GATGCTGTGG CCCGAATTGG CGGCGACGAG TTCGCCATCA TCCTCGAACA CATCACCACG
CCGAGTATCG TCGAACGCAT CGGACATGCT GTCGTTCATG CGGCGCTACG CCCGTTCACG
ATCGATGGCC AGACACTCGT CTCGACGTGC AGCGTCGGCA GCGCGATCCA CCAATCCGGC
CAGAGCGCAT CCGTCAGCGA ACTGTTCATA CGGGCGGATA TGGCCCTGTA CGACGCCAAG
CGACATGGCA AAGCCTGCTA TTCGGCGACC GGCCCCAACA AGGCCACGGA TATCGCTCCG
CACGCGTAG
|
|---|
| Protein sequence | MRHSLKYRMA IAAAIVVTLV FVARAGISQW YAYGRLNDLV QSQQDTLVRL VANQLDEKLE
SRAVVLRRLA RNLSPVLDAP SARLRQLATD TIDIPEQFNA VFMAWPDGTL AFSTAVPDGV
KMMISDRDYF KEILRGSPFV VSDLLQGKHS AAPGVILAVP LRGAKGELRA VVGGILNLSA
DNFLRELAGS RIGLTGFYCL VSAGPNPRYA MHPDSAKVLA PARASGDSCG AERPASRWEA
LEPQQPVVAR HLLASNGWEV ISVLPAKEAY GPLLEARQHA IVIGVVSLIF AAALMWMTIR
FLLAPLEHLH RAVRQLATRP SAVADLLVNR EDEIGELAGA FCEVMQQLSE REAALKAAND
SAAASEKRFV AIANHVPEFV AFIDASERFA FVNQAYARHY GLPADQITGL SVRELWGTPD
YVANKPYLER ARTGEVVTFT RETSDGTARE ITYQPAWNDT QDVLTGLHMF ARDVTGERLK
LRTLEAQTLS DHLTGLLNRK GFDRRLQEAM ARADSADHGA ALLLVDLDDF KAVNDSYGHP
VGDRLLVAFA ERLRTCVRSG DAVARIGGDE FAIILEHITT PSIVERIGHA VVHAALRPFT
IDGQTLVSTC SVGSAIHQSG QSASVSELFI RADMALYDAK RHGKACYSAT GPNKATDIAP
HA
|
|---|
| |