| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2201 |
|---|
| Symbol | |
|---|
| ID | 4039018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2410947 |
|---|
| End bp | 2411741 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637977595 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_584349 |
|---|
| Protein GI | 94311139 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00796111 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.121922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAATG CATTGCAAGG GCGTCACGCC CTGGTGACCG GCGGCGGGCG TGGCATCGGT
GCCGCCATCG CGCGCCGGCT GCTGGCCGAT GGCGCCAGCG TCACGCTGCT GGGTCGCGAG
CAGGCAGCGC TTGATGCGAC CGTTCATGCG CTGCAATCGT GTGTGATCGA AGGCGCGGCG
CTGGGCGCGG TCAGCGCGGA CATCACGGAT GCCGATTGGG TGAGTGGAGC CTTCGCTGGT
GCCACTGAAG CACGCGGGCC GATCACGCTG CTGGTCAACA ACGCCGGTCA GGCGTACAGC
GCGCCGTTCG GCAAGACCGA TCTCGCGCTC TGGCAGCGGA TGCTCGAGGT CAACCTGACC
GGCACCTTTA TCTGCACGCA GGCGGCGCTG CCGGCGATGC TCGAGGCGGG CTGGGGGCGC
ATCGTGAATG TCGCCAGCAC GGCCGGCCTG ATCGGGTACG GCTACGTCAG CGCCTATTGC
GCGGCGAAGC ACGGCGTGAT CGGCCTGACC CGCTCGCTGG CGCTGGAACT GGCGACCAAG
GGCGTGACGG TCAACGCGGT GTGCCCGGGC TATACCGAAA CCGACATCGT GCGCGACGCG
GTGGCCAATA TCGTCGGCAA GACGGGGCGC TCGGAAGAAC AGGCGCGCGC GGAACTGGCC
GCGCGTAACC CGCAGCGGCG TCTGGTACGG CCCGATGAAG TGGCTGATGC GGTGGCCTGG
CTGTGCCAGC CCTCGGCGTC CGCGATCACG GGGCAAGCCG TGCCGGTGGC CGGCGGCGAG
GTGATGGCGG GCTGA
|
|---|
| Protein sequence | MGNALQGRHA LVTGGGRGIG AAIARRLLAD GASVTLLGRE QAALDATVHA LQSCVIEGAA
LGAVSADITD ADWVSGAFAG ATEARGPITL LVNNAGQAYS APFGKTDLAL WQRMLEVNLT
GTFICTQAAL PAMLEAGWGR IVNVASTAGL IGYGYVSAYC AAKHGVIGLT RSLALELATK
GVTVNAVCPG YTETDIVRDA VANIVGKTGR SEEQARAELA ARNPQRRLVR PDEVADAVAW
LCQPSASAIT GQAVPVAGGE VMAG
|
|---|
| |