| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2142 |
|---|
| Symbol | |
|---|
| ID | 4038957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2333220 |
|---|
| End bp | 2333900 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637977534 |
|---|
| Product | NLP/P60 |
|---|
| Protein accession | YP_584290 |
|---|
| Protein GI | 94311080 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0634754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGAA CGGTACTTCA TTCCCTGGCG CGCGCCGCCG TTGGAATTGC CATTGTCTGC
GGTGCGACTG TGTCGAATGG AGTGCTGGCG GATACGGTGT TCAAGGATAC CGACGCCCGG
ATCGATGCCC GTGCGGATGT CACGGACGCG CATCCGGAAG GCAAGCGTGG CTTGCTGTCG
TCGATGATGA ACTCCACCAG CAATGTCGCC ACGAAAGCTG GCGACCTGGT CATGAACGCG
CTGGGTCTGA TCGGTGTTCG TTATCGCTTC GGCGGTAACA GCCCCGAGTC GGGTCTGGAC
TGCAGCGGCT TCGTCCGCTA CGTGTTCAAC GACACCTTCG GCTTCATGTT GCCCCGTCGC
TCCGTCGAAA TGAGCCAGGT TGGCGCCACG GTTGCGGCGA ACGATCTGCG GCCCGGCGAT
CTGGTGTTCT TTAACACCAT GCGCCACACG TTCTCGCACG TCGGCATCTA TATTGGCGAC
AACAAGTTCG TGCACGCGCC GTCCACCGGC AGCAAGATCC GTGTCGATGA CATGCGTGCC
GCCTACTGGG TGACGCGCTA CAACGGTGCC CGCCGTATCG ACGATTCGGC GCGTGGCTCG
GTCGAGAACA CCAGCAACAT GATCGAGACG CTCAAGCGTT ACGATCCGAA TGCCCAGGGC
CGCTCGCTTT ACGGTGGCTA A
|
|---|
| Protein sequence | MQRTVLHSLA RAAVGIAIVC GATVSNGVLA DTVFKDTDAR IDARADVTDA HPEGKRGLLS
SMMNSTSNVA TKAGDLVMNA LGLIGVRYRF GGNSPESGLD CSGFVRYVFN DTFGFMLPRR
SVEMSQVGAT VAANDLRPGD LVFFNTMRHT FSHVGIYIGD NKFVHAPSTG SKIRVDDMRA
AYWVTRYNGA RRIDDSARGS VENTSNMIET LKRYDPNAQG RSLYGG
|
|---|
| |