| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2112 |
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| Symbol | rumA |
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| ID | 4038920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2293575 |
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| End bp | 2295050 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637977498 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_584260 |
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| Protein GI | 94311050 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0203471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.384395 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGGCG CCGCGACTGG ACTACAATCG CGCTTCTGCA AAACAATACG ACAGGTCCCA
CTGGTGTCTC AAGCCGTGTC TTCCCAGCCC AATCCGACAA GCCACCCGGA AGCGGCATCT
GCCGCTTCCG CCGCTTCCAA TGATCCCGTC GTCAAGATCG ACAGCCTCGA CATGGAGGCG
CGTGGCGTCG GCCGTCTGGA GAACGAGGAC GGCACGCCAG GCAAGGTGAT TTTCGTCGAG
GGCGCGCTGC CCGGCGAGAC GGTTGCGTAT CGCAGCTATC GCCGCAAGCC TAGCTACGAA
CAGGCCCATC TCGTCGAGGT GAAGCAGGCC TCCGTCATGC GGGTGAAGCC GGGTTGCCAG
CATTTTGGCG TGTGCGGCGG CTGCTCGATG CAGCACCTGG ACTCGCGCGC GCAACTGGCA
ATCAAGCAGC GTGTGCTCGA AGACAATCTC TGGCACCTGT CGAAGGTGAA GCCCGACGTC
GTGTTCCGCC CGATCGCGGG CCCGGATTGG GGCTATCGCT ACCGCGCCCG TCTGACGGTG
CGGCACGTTG TCAAGAAGGG TGGAGTACTG GTGGGCTTCC ACGAGCGCAA GAGCAGCTAT
GTGGCGGACA TGACGCACTG CGAGATCCTG CCGCCGCATG TGTCGGCAAT GCTGGTGCCG
CTGCGCGAAT TGGTGGGCGG CCTGTCGATC CATGATCGGA TGCCGCAGAT CGAACTGGCC
GTTGGTGCGG AGGTGACCGC ACTTGTGTTG CGCGTCCTGG AGCCGCTCAA CGACGCCGAC
AAGGACTTGC TGCGGGCCTT CGCCGATCAG CATCAGGTGC AGTTCTGGCT CCAGCCGAAG
GGGCCGGACA CGGTCTATCC GTTTTATCCG GCCGAGCAGG AGCTGGCCTA TACACTGCCC
GAGTTCGGCA TCCGGATGCC GTTCAAGCCG ACCGACTTCA CGCAGGTCAA TCACCAGATC
AATCGCGTGC TGATTGGTCG CGCGCTACGT CTGCTGGATG CGAAGCCGAC TGACCGCCTG
CTCGACCTGT TCTGCGGCAT CGGCAATTTC ACGCTGCCGC TGGCGACGCA GGGTGCATCT
GTCATGGGGA TCGAGGGAAG CGAGGTGCTG ACCACGCGTG CGCTGGCCAA TGCCGAGTAC
AACGGGCTGG CAGCCAAGAC GTCCTTCGCC TGCCGCAATC TGTTCGAGGT GACCGCCGAG
GACATCGCAG CGCTGGGCCG CTTCGACCGC TGGCTGGTAG ACCCGCCGCG CGAGGGTGCG
CTGGCTGTCT GCAAGGCGCT TGCTGAACTG AGTCAGGCCG GTAGCGACGT GCTGCCGAAG
CGTATCGTCT ATGTGTCGTG CAGTCCGGCG ACGCTGGCGC GTGACGCGGG CTTGCTGGTG
CACGAGGCCG GCTACCGCCT GGCCGGCGCG GGCGTGGTCA ATATGTTCCC GCATACGTCG
CACGTGGAGT CGATCGCGGT GTTCGAGCGC GACTGA
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| Protein sequence | MSGAATGLQS RFCKTIRQVP LVSQAVSSQP NPTSHPEAAS AASAASNDPV VKIDSLDMEA
RGVGRLENED GTPGKVIFVE GALPGETVAY RSYRRKPSYE QAHLVEVKQA SVMRVKPGCQ
HFGVCGGCSM QHLDSRAQLA IKQRVLEDNL WHLSKVKPDV VFRPIAGPDW GYRYRARLTV
RHVVKKGGVL VGFHERKSSY VADMTHCEIL PPHVSAMLVP LRELVGGLSI HDRMPQIELA
VGAEVTALVL RVLEPLNDAD KDLLRAFADQ HQVQFWLQPK GPDTVYPFYP AEQELAYTLP
EFGIRMPFKP TDFTQVNHQI NRVLIGRALR LLDAKPTDRL LDLFCGIGNF TLPLATQGAS
VMGIEGSEVL TTRALANAEY NGLAAKTSFA CRNLFEVTAE DIAALGRFDR WLVDPPREGA
LAVCKALAEL SQAGSDVLPK RIVYVSCSPA TLARDAGLLV HEAGYRLAGA GVVNMFPHTS
HVESIAVFER D
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