Gene Rmet_1972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1972 
Symbol 
ID4038777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp2148462 
End bp2149100 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content67% 
IMG OID637977355 
ProductNLP/P60 
Protein accessionYP_584120 
Protein GI94310910 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.107958 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.172208 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCAGC GCCCGTTTCA CTCACCCTCT CGCCGGCTTT CACTATCCGC ACTGTGCGCA 
GCGGCACTAC TGCTCGCCGC CTGCGCCGGC GGGCCGCCCG CACGTCAGGG CGCGTCGCTG
CCCCGCACAC CGGGCAAGCC AATCGTCGAT CCCAGCGCCG GACTCGAGGA AGTCTCGATC
CAGGCAATGT CCCTCGTCGG CACACCATAC CGCTACGGCG GAAACACGCC TGACTCCGGA
TTCGATTGCA GCGGCCTGGT CCGTTACGTG GTCCAGCGCG CCGCCAGCGT CAACCTGCCA
CGCACCACCG AGCAAATGGG ACAGCGTGGC ACGGCACTCG ATCGGCGCGA TGTCGCATCG
GGCGATCTTG TCTTTTTCAA CACCACGGGA CGCGCCAACT CCCATGTCGG CATCTATGTC
GGACAGAATC GCTTTGTCCA CGCCCCAGCC ACCGGTGGCA CCGTCCGGCT GGAAGACATG
ACCAAGTCGT ACTGGGCGTC GCGCTACAAC GGCGCGCGGC GCGTCGTGGC CGCCGGCAGC
CTCGATATGA CCCCGGTTCC CAGCCCAGTT CCGTCAGCCC CAATCACCCC ACCCGCCCCG
GACGACGACG ATCCGATCGC CGCATTCGCG AACCGGTAA
 
Protein sequence
MPQRPFHSPS RRLSLSALCA AALLLAACAG GPPARQGASL PRTPGKPIVD PSAGLEEVSI 
QAMSLVGTPY RYGGNTPDSG FDCSGLVRYV VQRAASVNLP RTTEQMGQRG TALDRRDVAS
GDLVFFNTTG RANSHVGIYV GQNRFVHAPA TGGTVRLEDM TKSYWASRYN GARRVVAAGS
LDMTPVPSPV PSAPITPPAP DDDDPIAAFA NR