Gene Rmet_1796 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1796 
Symbol 
ID4038598 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1948343 
End bp1950220 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content67% 
IMG OID637977176 
Productfusaric acid resistance protein region 
Protein accessionYP_583944 
Protein GI94310734 
COG category[S] Function unknown 
COG ID[COG1289] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00451003 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAGCT GGCCGAATGC CCGACAGTGG CTGTTTTCGC TGAAGGCATT CGCTGCCGCG 
ATGCTGGCGC TCTACATCGC ACTGTATTTC GGCCTGCCGC GCCCCTACTG GGCCATGGCC
ACGGTCTATT TTGTCTCCCA TCCGCTGACG GGCGCGACGC GCTCGAAGGC CGCCTATCGC
GTGGCCGGTA CCGTGCTCGG CGCCACCGCG GCAGTGGCGA CGGTGCCGCA ACTGGTCAAT
ATGCCGATCG TGCTGATGGG CGCGATCTCC CTCTGGATCA TGGTGCTGGT CTACCTGTCG
CTGCTGCAAC GGTCACCGCG CAGCTACGTG TTCCTGCTGG CCGCCTACAC GCTGCCGATC
GTCGCGCTGC CGGCGGTGAT GCACCCGGGC GACATCTTCG ACATCGCGGT GGCCCGGATC
GAGGAGATCG TGATCGGGAT CGTCTGCGCG GGGCTGGTCG GATCGATCGT CTTTCCCGCG
AAAGTGGCGC CAGCGCTGCG AGACCGCATC CGCATCTGGC TGCACGACGC GGCCGCATGG
GCCAACGATA TCGTCAATGC CAGCCCCCGT GCCGATGCCA GCCGTCACCG TCTAGCCGCC
GATATGCTGG CGCTCGACCA GTTGATCGCG CAGCTTTCGT TCGATACCGA CAGCCAGCAG
ACGCTGCACC ACGCCCGCGC GCTGCGTGCG CGGATGTCGG GGTTGATGCC GATCCTGTCG
GCGCTGGAAA GCGTGCTGCA TGCACTGCGC ACGACGCCCG AAGGCAGCGA GCGCGAAGCC
CTGACCCGTA CCGCCACCCA TCTGCAGGCG CAGTTCAACC GGCTGATGCG GACCTGCGAG
AGGCTGCAGC ACGGCATCAG CGACCACCCG CCCGACCTGC CCCCCGAGGA ACCGGCAGGC
GCCGAGCAGG CCGCGGACGA GGCGGCCGCG TATCACGACC ACGCCATGTT GCTGTTCGGC
GCGGTGTCGG CCGGACTGGC GGTGTTCTGC GTCGGGCTGC TCTGGATCTT CTCGGGCTGG
GAGGATGGCG GCGGCCCCGT GGCCGTGGCG TCGATCGCAA GCTGCTTTTT CGCGACCATC
GACGAGCCCC GTCCGGTGGC GCGCATGTTC CTGCGCTGGA GCGCCGCGTG CCTGCTGATT
GCATCGTTCT ACCTGTTCAT GGTGATTCCG CACGCGCAGA CGTTCGAGAC CCTGGTGGGG
ATGTTGTCCG TGCCCTACCT TGGCATTGGC ATGTTGATCC AGCGGCCAGG ATTCAATCTG
ATCGCGATGC TGCTATCGGT GAATACGGCG TCGTTCGCCA ACGTGCAGAG CGTCTACGAC
ACAAACTTCC TCGGCATCTT CAATACGAGC CTGGCCAATG CGGCGGCCAT GCTGTTCGCA
CCGGTCTGGG CGATGCTGGC GCGGCCTTTC GGCGCCCATG TGGCCGCGCA CCGCCTGCTG
CGCGCGAGCT GGCAGGACCT GGCGCACGCC GCCACGTGGC GCGCTGCGGA CATCCATACG
CAGCTTGGCG CCCGGATGCT CGACCGGCTG GGCCAGTTGA TGCCACGCCT GGGCGCCAGC
CGGGGGCGGC TGGCATCCGA TGGGTTTACG GAGTTGCAGA TCGGCTACTG CACGCTGGCG
CTGCAGCGCG CGCTGCCGTC ATTGCCGCCA GCTGCGCGCA AACCCATCAG GCGGGTGTTG
AGCATCGTGG CACGCCACTT CCGGGCGCGC GCGCGCGCCG GGCATGTGGT ACCCGTGCCG
ATGCCACTGC GGCAGTGGCT CGATACCTCG ATCGGACAGG TCATGGCGGC GCGTGGCGAT
AACCAGCAGA TGGCGGCTGT ACTGAGCGCG CTCGTGGTGC TTCGCCTCAC GATGCAAACG
CATGAAAAAA ACGACTGA
 
Protein sequence
MASWPNARQW LFSLKAFAAA MLALYIALYF GLPRPYWAMA TVYFVSHPLT GATRSKAAYR 
VAGTVLGATA AVATVPQLVN MPIVLMGAIS LWIMVLVYLS LLQRSPRSYV FLLAAYTLPI
VALPAVMHPG DIFDIAVARI EEIVIGIVCA GLVGSIVFPA KVAPALRDRI RIWLHDAAAW
ANDIVNASPR ADASRHRLAA DMLALDQLIA QLSFDTDSQQ TLHHARALRA RMSGLMPILS
ALESVLHALR TTPEGSEREA LTRTATHLQA QFNRLMRTCE RLQHGISDHP PDLPPEEPAG
AEQAADEAAA YHDHAMLLFG AVSAGLAVFC VGLLWIFSGW EDGGGPVAVA SIASCFFATI
DEPRPVARMF LRWSAACLLI ASFYLFMVIP HAQTFETLVG MLSVPYLGIG MLIQRPGFNL
IAMLLSVNTA SFANVQSVYD TNFLGIFNTS LANAAAMLFA PVWAMLARPF GAHVAAHRLL
RASWQDLAHA ATWRAADIHT QLGARMLDRL GQLMPRLGAS RGRLASDGFT ELQIGYCTLA
LQRALPSLPP AARKPIRRVL SIVARHFRAR ARAGHVVPVP MPLRQWLDTS IGQVMAARGD
NQQMAAVLSA LVVLRLTMQT HEKND