| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1788 |
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| Symbol | |
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| ID | 4038590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1938998 |
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| End bp | 1940626 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637977168 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_583936 |
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| Protein GI | 94310726 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.337598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACAC CCCCCGCGCA GCCGCCGTTC GAGCTGGCTT CGCTACTGAC CATCGACGCC
AAGGCCGCGC AGATTCGCCT TGGCCAGTCG CGCATGGTGC TGATGCACAC CGAGGCGCTG
AGCTACCTGC GCAAGGAAAT CCTCGATACG CTTGGCGTGG AGCGCGGCAA GGGGCTGCTG
ATCCGCATGG GCTACGCGCA AGGCATGCGC GATGCCGAGA TGGTCAAGCG CGAGCGCAGT
GAAGAACTGG CCAGTTCGCC CAACGATGCC TTCCTTTGGG GGCCGCAGTT GCACATGCTC
GAAGGCGTCA CGCGCGTGGA CCCGGTTCGC CTGGAGATCG ACCGCGACAC CGGCCACTTC
TATGGCGAGT TTCTCTGGCA GGACTCATGG GAGGGCGAAG CGCCCGTGAT GGAGTCCCTG
CCCCGCGAGG AGTCTGGCTG CTGGGTGCAG CTTGGCTACG CATCGGGCTA CAGCAGCACG
TTCATGGACC GGCTGGTCAT CTACAAGGAA ACCGAATGCG AGCGGCGCGG CGACAGTCTC
TGCCGCATCG TCGGCAAGCC GGCCGAGACG TGGAACGACC CCGACTACCT GAAGTACTTC
GAACCCGACT CCGTCATCAG CGACCTGCTC ACCCTGCAGC AGGAAGTCAG CACACTGCGC
GAAACACTGT GTGGCGCGAA CCAGGGCAAC CTGATCGGCC AGTCGCCGGC GTTCCGTGAA
GCCTTCAACC TGCTTTCCGC CGCGGCAGAC AGCCATATCA CCGTGCTGCT GACGGGCGAG
ACCGGTGCCG GCAAGGAGAT GTTCGCGCGC TGGCTGCACG ATCACGGCCC GCGCGGCGAG
CAGCCGTTCG TCGCGGTCAA CTGCGCGGCG ATCCCGCACG AGTTGATCGA ATCCGAGCTG
TTCGGCGTGG AAAAAGGCGC CTACACGGGC GCCCAGCAGT CGCGCCCCGG CCGCTTTGAA
CGCGCGCATG GCGGCACCCT GTTCCTCGAC GAAATCGGCG ACCTGCCGCC GGCCGCGCAG
GTCAAGCTGC TGCGCGTGCT GCAGAACAAC GAAGTGGAAC GGCTCGGTGG CGTGGAGGCG
CGCAAGGTCA ACGTCCGCCT GATCGCCGCC ACCAACGTCA ATCTGGCGCA GGCGATCAAG
CACGGCCAGT TTCGTGCTGA CCTGTTCTAC CGGATCAGCA CCTATCCGAT CTCGATCCCC
GCCCTGCGCG AGCGCAAGGA AGACATCCCC GAGCTCGCCC AGTCATTCAT CCAGCGCTTC
AACGCGCTGT ATCAGAAGCA GGTGCGCGGC TTGAGCACGC GGGCGCGCGA TGCGCTGGTG
CAATACCCGT GGCCCGGCAA TATCCGCGAA CTCGAAAACA TGATCGAGCG TGGCGTCTTG
CTGGCGCCTG CCACCGGGAT GATCGACGTC GCTCATCTGT TTGCCAGCCA GCAGGCTGCC
GGTAGCGAGG AGCCCAGCCA GGATGCCGAC GCGCTGATCG AAAAACTGCT CAACCAGCAG
GTGTCCCTGC CGCAAATCGA AGCCAAGCTG ATGCAACTGG CGATGACGAC GACGCGTGGC
AACCTGTCGT CGGCGGCGCG GATGCTGGGG ATCACGCGGC CGCAGCTGGC GTATCGGTTG
AAGAAGTAG
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| Protein sequence | MTTPPAQPPF ELASLLTIDA KAAQIRLGQS RMVLMHTEAL SYLRKEILDT LGVERGKGLL
IRMGYAQGMR DAEMVKRERS EELASSPNDA FLWGPQLHML EGVTRVDPVR LEIDRDTGHF
YGEFLWQDSW EGEAPVMESL PREESGCWVQ LGYASGYSST FMDRLVIYKE TECERRGDSL
CRIVGKPAET WNDPDYLKYF EPDSVISDLL TLQQEVSTLR ETLCGANQGN LIGQSPAFRE
AFNLLSAAAD SHITVLLTGE TGAGKEMFAR WLHDHGPRGE QPFVAVNCAA IPHELIESEL
FGVEKGAYTG AQQSRPGRFE RAHGGTLFLD EIGDLPPAAQ VKLLRVLQNN EVERLGGVEA
RKVNVRLIAA TNVNLAQAIK HGQFRADLFY RISTYPISIP ALRERKEDIP ELAQSFIQRF
NALYQKQVRG LSTRARDALV QYPWPGNIRE LENMIERGVL LAPATGMIDV AHLFASQQAA
GSEEPSQDAD ALIEKLLNQQ VSLPQIEAKL MQLAMTTTRG NLSSAARMLG ITRPQLAYRL
KK
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