| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1756 |
|---|
| Symbol | |
|---|
| ID | 4038558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1905485 |
|---|
| End bp | 1906696 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637977136 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_583904 |
|---|
| Protein GI | 94310694 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0218449 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAG AAAACATGGC ATCGCTGCCG CTGGCCGGTG TGCGGGTGCT GGACCTGTCA
CGTGTCCTGG CAGGACCGAT GTGCGCGATG GCGCTGGCCG ACCTGGGCGC GGACGTCATC
AAGGTGGAAC ATCCCGCCCG TGGCGACGAC ACCCGAGACT GGGGCGTGCG CATCGGCACC
CGCAATACCT CCTATTTCAA TAGCGCGAAC CGCAACAAGC GGTCCGTGAC ACTCGATCTG
CAAAGCGAAG CCGGTCTGGC GCTGGCACGC CAACTGGCTG CGCAGTGCGA CGTGGTCATC
CAGAACTTCA AGGTGGGCGG AGCGGAAAAG CTCGGCCTGG GTTACGAGCA GCTCAGCGAA
ATCAATCCGC GCCTGGTCTA CTGCTCGATT TCCGGTTATG CGCGCTTTAC GCCGGAAGCC
GAACGTCCGG GCTACGACCT CGTCGTGCAG GGCGAGTCCG GCGTGATGGC TACCAACGGC
GAGGCCGGGC AGGGGCCGCT GAAGTTCGGC GTGGCAGCGG TCGACATGTT CACGGGCATG
TATTCGGCCC AGGCGATCCT GGCTGCGCTG TTTGCGCGCC AGTCCACCGG CCGTGGCCGA
CACGTGCAGA TGGCGCTCTA CGACTGCGGC GTGATGATCA CGTCCTACTA CGGCATGGAA
GCCTTGCTCA AGGCCGGCGA TCCGCCCAAG TTCGGCAATG CGCATCCGTC CATCGTGCCG
TACGGTGTGT TCGAGGCCGC CGATGGCCCG CTGGTGATCA CGGTCGGCAA CAACGGACAG
TTCCAGCGCT TCTGCCGCGA GGTCATCGAC TGCCCGGAAT GGGCCGATGA CGAACGCTTT
GCCACCAACA CGGCGCGCTC GGCTCATCGC GACGTACTGC TCGTGGAGGT ACGGGAGCGG
CTGCAGCGCT TTACGCGCGC CGAATTGCTG CAACGCCTGA CGGCCGCGCA GATTCCGTGC
GGCGAGGTGC TGGGCATGCT GGATGCCCTG CAATCGGAAC GCACCACGCA GGCTGGCTTG
CTGCATCGAT TCGAGGACAG CGAGGCCGGT GCCCAGGCGG TGCTCGCCCC GCCGTATGCG
CTCGATGGGC AGCGCCTGCC CGTGCGCATG CCGCCGCCCC ACATGGGAGA GCACACACAT
GAAGTGTTCA AGGAATTGCT GAAGCTCGAC GACAGCGCCA TCGCGGATCT GCAATCCAGA
GGCGTGATCT GA
|
|---|
| Protein sequence | MKQENMASLP LAGVRVLDLS RVLAGPMCAM ALADLGADVI KVEHPARGDD TRDWGVRIGT
RNTSYFNSAN RNKRSVTLDL QSEAGLALAR QLAAQCDVVI QNFKVGGAEK LGLGYEQLSE
INPRLVYCSI SGYARFTPEA ERPGYDLVVQ GESGVMATNG EAGQGPLKFG VAAVDMFTGM
YSAQAILAAL FARQSTGRGR HVQMALYDCG VMITSYYGME ALLKAGDPPK FGNAHPSIVP
YGVFEAADGP LVITVGNNGQ FQRFCREVID CPEWADDERF ATNTARSAHR DVLLVEVRER
LQRFTRAELL QRLTAAQIPC GEVLGMLDAL QSERTTQAGL LHRFEDSEAG AQAVLAPPYA
LDGQRLPVRM PPPHMGEHTH EVFKELLKLD DSAIADLQSR GVI
|
|---|
| |