| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1748 |
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| Symbol | |
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| ID | 4038550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1894768 |
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| End bp | 1896234 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637977128 |
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| Product | RND efflux system outer membrane lipoprotein NodT |
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| Protein accession | YP_583896 |
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| Protein GI | 94310686 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.630432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.156732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCTAG CCATAAGTGC GGTTTGTATA TGGCTAGCGG GGTGCTCTTT CGCACCGACT
TACCACATTC CGGAGATGGA TCTTCCCGCG AAGTATGCAG AAGCGAGCGA TCCAGTCCTG
AGTCAGATTC CCGCTGAGTG GTGGACGTCT TACCATGACG ACGACCTTGA TGCGTTAATT
CGACGCATCG ATGTGACAAA TCAAACGCTC AAGAGATCGA TAGCCCTTCT GCAAGATTCC
CGGGCCCAGG CCGATGCTGC ACGCGCAGCG TACTTTCCGA CAGCCGGCGC GAATGCCAGC
GCTACCAGTA GTCATGTGTC GGCAAACGTA GTTGGACGGT CGCTGGCCGG TAAGACAACG
CCCGACCGGC TTATCGGATT CAGTGCGACC TGGGAGCCTG ACCTTTTTGG GCGAATTGGC
AATGCCGTCG ATGCGGCAAC GTCTCGAGTG CAAGCAAGTG CGGACGATGT CGCCGCAGTT
CGGCTGACCT TGCAGGCGGA AGTCGCTACG GATTACTTTG CGATCCGCTC GCTTGACCGC
GAGGCATCGC TGCTAAGGCA GACGGTGGAC GCTTATTCTT CGGTGCTCTC GATGGTCACT
AACAGATATA AGGGCGGAAT TGCGGCTGAG AGCGATGTTG CGCAGGCTCA AGCTCAGCGC
GACAGTACTA AAGCTCAATT GGCTGACCTA ACTCTTGCGC GAACCCAACT GCAACATGCG
CTCGCAACAC TGGTGGGCGA GCCTGCCAGC ACGTTTTCGA TCGCACCACA TGACGCCTAT
GGAACGCAAC TTCCTGTAGT ACCTGCCGCA GTTCCCAGCG AGTTATTGAA GCGACGTCCG
GACATAGCTG CAGTAGAACG TCGTGTTTCG GCGGCCAATT CCCAAATCGG CGTTGCTAAG
GCCGCGTTCT TTCCGAGTCT CATGCTCAAC CTGAGCGGAG GTGTCGAGAG CTCAGGCTTG
GCCGGACTCC TTACGGCCCC AGGTCGCTTC TGGGCGGTGG GGCCTGCCTT GGCTGCGACA
ATCTTCGACG GAGGGAAGCG CCAAGCCGGC GTGGACAGTG CCCAGGCGCA ATTCGATGCT
GCTGCGGCCG ACTACCGGCA GACCGTGCTA ACGGCGGTCC AAGACGTGGA GGACAGCTAC
GCGGCCACGA GACTCCTGAA GGAGGCTGCA TCGAGTCAGG AAGCCGCAGT CCAGGCGTCG
CAACGCGCGC TCGCGCAGGC GACGGATCGC TACAAGAAAG GCGCGGCGGC ATACCTCGAC
GTTAATGTGG TGGAGGCAAC GACGCTCACT AACGAACGCA CTCTCGAGAG TATTCATCGA
CGTCAGTTGG TCTCTAGCGT AGCGCTCTTT CGCTCGCTTG GGGGAGGCTG GCAGGCTAAG
GATGGGGCTG ACGCTCAGAG TACCGCTGTC GACCCGTTGG CGACGTCAGA ACCGGCGGCA
ACGGAAGGAC TGCATTTAAA GCGTTAG
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| Protein sequence | MRLAISAVCI WLAGCSFAPT YHIPEMDLPA KYAEASDPVL SQIPAEWWTS YHDDDLDALI
RRIDVTNQTL KRSIALLQDS RAQADAARAA YFPTAGANAS ATSSHVSANV VGRSLAGKTT
PDRLIGFSAT WEPDLFGRIG NAVDAATSRV QASADDVAAV RLTLQAEVAT DYFAIRSLDR
EASLLRQTVD AYSSVLSMVT NRYKGGIAAE SDVAQAQAQR DSTKAQLADL TLARTQLQHA
LATLVGEPAS TFSIAPHDAY GTQLPVVPAA VPSELLKRRP DIAAVERRVS AANSQIGVAK
AAFFPSLMLN LSGGVESSGL AGLLTAPGRF WAVGPALAAT IFDGGKRQAG VDSAQAQFDA
AAADYRQTVL TAVQDVEDSY AATRLLKEAA SSQEAAVQAS QRALAQATDR YKKGAAAYLD
VNVVEATTLT NERTLESIHR RQLVSSVALF RSLGGGWQAK DGADAQSTAV DPLATSEPAA
TEGLHLKR
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