| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1744 |
|---|
| Symbol | |
|---|
| ID | 4038546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1890805 |
|---|
| End bp | 1892658 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637977124 |
|---|
| Product | acyl-CoA synthetase |
|---|
| Protein accession | YP_583892 |
|---|
| Protein GI | 94310682 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.14345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.264223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCA GCATACCTCT CGTGTCGAGC CTCACGGAAA TTGAAGCGAT CGAGCGCTCC
GGCGTCGCGG TTCAGGCATG GAACGCCGCG ATTGGTGGCA CGGTCTACGG CGCGATTCGC
GCTAGCGCCC AGCGGCATGG CGATGCGCCG GCGCTGACCT ACATTGATGC GGCGGATGGG
CCGGCCCGGA CGGTGAGCTA TCGGGAGCTT TTGGACAACA TTACGGCGGC AGCGCGGTTC
TTTTCGGAAC TGGCTGGCCC GGGCTGTGGC GTGGCCTATA TCCTGCCGTC CTTCGTCGAA
ACGCACTATG TGCTCTGGGG CGCCGAAGCT TGTGGTTTCG CGGTGCCGCT CAACCCCTTC
CTTCAGCCCG ATGAGATCGT CAATCTTGTC CGTAATTCGG CTGCCGATGT TCTCGTGTTT
CCGAAGGGCG AGATCCCTGG CATCGCGGAG CGCGTCGCGG CGATCCGGGC GAATCTTCCG
GATGTTCGCC TTGTAGCGGT CGGGCCAGGC TCTGCGCCGG ACTTTGCCAT CGATTTCAAT
GCAGTCCTGG CGGACAGCAC CGCGCATGGC TGCGCAACGT GGGAGCCGTC GGGCGACAGC
GACGCAGTTG TGGCGTATTT CCACACCGGA GGGACGACCG GGCTGCCCAA ACTTGTCGCG
CATAGCAGCA GGAATCAGCT TGCCGCGGCG CTGGGGGCTG CAAGCCTGCT TGGCATGCGC
AAGGATGACC GGGTGACCAA CGGCATGCCG TTGTTCCACG TTGGCGGGAC GATCGTGAGT
ACCTTGTCGG TCCTGCTGTC GGGCGGCCAT ATCATCATGC TCTCGGCCCA AGGACTCCGG
AATCCCGCCA TGGTGACGGG GATCTGGAAG ATCGTCGAAC GGTTCGGCAT CACGATTTTT
GGCGCTGTGC CGACGGCTCT CGGCGCCCTC CTCAACGTCC CGGTCGATGC CGATATTTCA
TCGATTCGAT ACGGCCTGAC CGGGGCGGCA CCGTGTCCAT TCAGCGTGAC AAAGCGCTTT
GCCGAGGTAA CTGGTGTTGA GCTTCACGAG CTGCTTGGCA TGACGGAAAC CGGCGGTGCG
ACGGCGGCGG ATGCGGCAGG CCAGCGCCCG ACAGTGGGTT CCGTGGGATA TCGGCTCCCG
TTCACGAGAC TGCGTGTGCG ACGCCAAGAC GCCGAGCAAG GTCTGGGGGA CGATTGCGAT
CCGCATGAAG TCGGTGTCCT GTTTGTCGAG GGGCCGCATG TTTCGCACGG CTATCGTGAT
CCGAGCCAGA ATGCCGGGGT CTTTATCGAA GGTGGGCTGA ACACAGGAGA CCTCGCCTAC
TTCGACGATG CGGGCAAGCT TTTCATCGCT GGACGCGCAA AGGACCTCAT CATCCGCAGC
GGCCACAACA TCGATCCGGG GATGATCGAA CAGGCGATGA TGATGCACCC TTCCGTCGTC
CTGGCAGCGG CCGTTTCGCT GCCGGACAAG TACGCTGGCG AATTGCCGGT CGTCTTTGTC
GTGGCAAAGC CTGGCGTCGG CATCAATCTT GAAGAACTCG ATGCCTTTGT CAAAGAGCGA
ATTGCGGAGC GGCCGGCCTG GCCGAAGGCG ATCCACGTGC TGGACCAGTT GCCCACTACG
GCCGTTGGCA AGCTGTTCAA GCCTGCCTTG CGGGTCAAGG CCGCAGAGCT ACTGCTGCGA
CCGGCACTGG AGACGATCGC GTCCACCGCG CTGAGAGCGG TCGAAGTGAG CGCGGGCGGA
AAGCGCGGTC TGCATGTCGA TGTGCGACTA GTGGCGCCGG ATGCCGAGAT CGAACAAGCC
GTGAAGGTCC ATCTGGAGGG CTATACGTTC ACCTGGGCGC TGCATCGCGA GTGA
|
|---|
| Protein sequence | MEFSIPLVSS LTEIEAIERS GVAVQAWNAA IGGTVYGAIR ASAQRHGDAP ALTYIDAADG
PARTVSYREL LDNITAAARF FSELAGPGCG VAYILPSFVE THYVLWGAEA CGFAVPLNPF
LQPDEIVNLV RNSAADVLVF PKGEIPGIAE RVAAIRANLP DVRLVAVGPG SAPDFAIDFN
AVLADSTAHG CATWEPSGDS DAVVAYFHTG GTTGLPKLVA HSSRNQLAAA LGAASLLGMR
KDDRVTNGMP LFHVGGTIVS TLSVLLSGGH IIMLSAQGLR NPAMVTGIWK IVERFGITIF
GAVPTALGAL LNVPVDADIS SIRYGLTGAA PCPFSVTKRF AEVTGVELHE LLGMTETGGA
TAADAAGQRP TVGSVGYRLP FTRLRVRRQD AEQGLGDDCD PHEVGVLFVE GPHVSHGYRD
PSQNAGVFIE GGLNTGDLAY FDDAGKLFIA GRAKDLIIRS GHNIDPGMIE QAMMMHPSVV
LAAAVSLPDK YAGELPVVFV VAKPGVGINL EELDAFVKER IAERPAWPKA IHVLDQLPTT
AVGKLFKPAL RVKAAELLLR PALETIASTA LRAVEVSAGG KRGLHVDVRL VAPDAEIEQA
VKVHLEGYTF TWALHRE
|
|---|
| |