| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1718 |
|---|
| Symbol | |
|---|
| ID | 4038521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1859568 |
|---|
| End bp | 1861214 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637977100 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_583868 |
|---|
| Protein GI | 94310658 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0767981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAACC TGATCGTTTC CGCGCGTTCG GCCTACGCAT ACCCGTTGCT GATCAAGCAG
CTCCTGATCA ACGCCATGAG CCTGTATGGC GACCAGGAGA TCAGCTACCG CGGCGAGCTG
CGCTACACCT ATCGCGAATT CCGCGAGCGC GTGGGAAAGC TGGCCAATTC GCTTTCGGCT
CTCGGTGTGC ATCACGGCTC CACAGTGGCC GTGATGGACT GGGACAGCCA CCGCTACCTG
GAGTGCTATT TCGGCGTGCC GATGATGGGC GCTACGCTCT TCACGGTCAA CGTTCGCCTG
TCGCCGCAGC AGATCCTGTA CACGCTGAAT GACGCGGGCG CTGACGTCGT GCTGGTGCAT
CCGGACTTCG TGCCCGTGAT CGACCAGATC CGGGACAAGC TCACGTGCAA GCCACGCTTC
GTGCTGATGG CAGACGGACA GACCGTGCCC GACACGGCTA TCCCGTTCGC CGGCGAGTAC
GAGGCACTGG TCGGCGCCGC CTCGCCGGAG TTCGAGTTTC CGGAGTTTGA CGAGCGCACG
AAGGCCGCCA CGTTCTATAC GACAGGCACC ACGGGCGACC CCAAGGGCGT GTGCTACAGC
CATCGCGACA TCGTGCTGCA TACGCTGACC GCGACGGCCA GCCTGTGCTC GCCGCGCGAA
GGCCAGCGTA TGCATCGCGA GGATGTGTAT ATGCCGATCA CGCCGATGTT CCATGTGATG
GCGTGGGGCA TCCCGTATGT TGCGATCACG CTGGGCCTGC GCACGGTCCT GCCGGGCCGC
TACGCGCCCG AAATGCTGCT GAAGCTGCGC GCCCAGGAAA AGGTGTCGTT CTCGCACTGC
GTGCCGACAA TCCTGCAGAT GCTGCTGCAC GCCGCAGAGG CAGGCGGACA GGACCTGAGC
GGCTGGAAGA TCATCATCGG CGGTTCGGCG CTGCCACCGT CCTTGTGCGA GGCCGCGCTG
GAGCGGGGCA TCGACATCTT TGCCGGCTAC GGCATGTCCG AAACCGGGCC GATCGTGGCG
CTGGCGCAGT TGCCGCCGGG ATACCAGCCG GCCAGCCGCG AGGAAGAAGT CCGCCTGCGC
TGCTCGACGG GCCGGCCGGT GCCGCTGGCA GACTTCCGCG TCGTGGGGAC GGACATGCGG
GAACTGCCGC GCGACGGCCA AAGCCAGGGC GAGATCGTGC TGCGCGCGCC ATACCTGACC
CGCAGTTACT TCCGCAAGCC GAGTGCGTCG GAAGAACTCT GGGCCGACGG GTACCTGCAC
ACGCAGGACG TCGCGGTCGT GCACGAGAAC GGCTTCGTGC AGATCGTGGA TCGCCTCAAG
GACGTCATCA AGACCGGTGG CGAGTGGGTC TCGTCGATCG AGATCGAGAA CCTGGTCACG
CGCGTGCCAG GCGTGCGGGA GTGCGCCGTG ATTGGCGTGC CCGACGCGCG CTGGGGCGAG
CGGCCGATGG CCTTCGTGGT GCGGCAACCG GATTCGGAAG TGGGCGCCGA GGACATTCGC
GCGGAGCTGA TGAACCATGT CTCGGCCCAG CGCCTGAGCA AGTTCGCGGT ACCTGAAGCC
GATCGGATCG CCTTTGTGGC CGAGATTCCG AAGACCAGCG TTGGCAAAAT TGACAAGAAG
CTGCTACGGG GGAACAAAGC AGCCTGA
|
|---|
| Protein sequence | MENLIVSARS AYAYPLLIKQ LLINAMSLYG DQEISYRGEL RYTYREFRER VGKLANSLSA
LGVHHGSTVA VMDWDSHRYL ECYFGVPMMG ATLFTVNVRL SPQQILYTLN DAGADVVLVH
PDFVPVIDQI RDKLTCKPRF VLMADGQTVP DTAIPFAGEY EALVGAASPE FEFPEFDERT
KAATFYTTGT TGDPKGVCYS HRDIVLHTLT ATASLCSPRE GQRMHREDVY MPITPMFHVM
AWGIPYVAIT LGLRTVLPGR YAPEMLLKLR AQEKVSFSHC VPTILQMLLH AAEAGGQDLS
GWKIIIGGSA LPPSLCEAAL ERGIDIFAGY GMSETGPIVA LAQLPPGYQP ASREEEVRLR
CSTGRPVPLA DFRVVGTDMR ELPRDGQSQG EIVLRAPYLT RSYFRKPSAS EELWADGYLH
TQDVAVVHEN GFVQIVDRLK DVIKTGGEWV SSIEIENLVT RVPGVRECAV IGVPDARWGE
RPMAFVVRQP DSEVGAEDIR AELMNHVSAQ RLSKFAVPEA DRIAFVAEIP KTSVGKIDKK
LLRGNKAA
|
|---|
| |