| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1701 |
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| Symbol | |
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| ID | 4038504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1841878 |
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| End bp | 1843116 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637977083 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_583851 |
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| Protein GI | 94310641 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.17328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGTG GACTGGAGTC CAAGGGCAGG CAGTATGCGT TCATGTTCCT CACCGCACTG
GCAGTAGCGG GATGCGGAAA GCAGGAGGCG AAGGGGCCGG CCGCGCCGCC CGTGACCGAG
GTTGGGGTCG TCAAGGTCGA CCTCCACGAC GTACCCGTCG CGTTCGAGTT CGTCGGGCAG
ACCGAGAGCT CGCAGCAGGT TGAAATCCGG GCGCGGGTCA ACGGTTTCCT GGAGCAACGG
CTCTATACCG AAGGCACGAT GGTCAAGGCG GGGCAGGTGC TGTTCCGCAT GGACCAGAAG
CCATTCAAGG CCGCGCTGGA CGCGGCCATG GCCGAACTGG CGCAGCAACA GGCGCGCCTC
ACCACCGCGC GCCAGAACCT TGCCCGCGTG CGCCCGCTGG CGGCCAAGAA TGCGTTGAGC
CAGAAGGATC TCGACGATTC CGTTGGGCAG GAGCAGGGCG CCGCCGCCGC GGTGGAGCAG
GCCAAGGCCA ACGTGACAAA CGCCCGTCTG AATCTGGACT ACACGACGAT CACCGCGCCG
GTCTCCGGGT TATCCAGCTA CGCCAAGAAG CAGGTCGGTT CGTATATCGA CGCGAGCAAC
AGCTTGCTGA CTTATGTCGC CAAGCTCGAC CCGATCTGGG TCAATTTCAG TTTGTCGGAG
AACGAGGTCC TCCAGTACCA GTCCCAGCAA GCCTCCGGGC AGTTGAAGAT GCCGCCGCGC
GGCTCGATGG AGGTGGAGAT CGTCTTGGCG GATGGCGCGA CCTATGGCAA GCGTGGCCAC
ATCACGTTTG CCGATGCATC GTTCAGCTCC GAGACTGGCA CCTATCTGCT GCGCGCGGAA
TTCCCGAATA CCGAAGGCGC GCTGCGTCCG GGGCAATTCG TGCGCGTTCG CGTGCTTGGC
GCGGAGCGCA CGCGCGCGAT CACGGTGCCG CAGGCGGCCG TGGTGCAAGG GCAACGTGGA
CAGTTTGTCT GGACCGTCGG CAAGGACAAC AAGGCAGAGA CCAGAGTGGT GGATGTCGGT
GAATGGGCGC AGGGCAACTG GATTATCCGC TCCGGCCTGC GCGAAGGCGA TACCGTGGTG
GTCGATGGCA CGGTGCGCCT CGCTCCCGGC GCGCCCCTCA AGCCAGTGGC CGCGCCTCCC
CAGCCGGTGT CCACCGAACG GCCGCCTGGC TCCCCCGGCG CCGCGCCCAC GCCAGCCTCG
GCCCCAACCG CCGCCCCTGA GAAGGGGGCG ACGTCATGA
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| Protein sequence | MASGLESKGR QYAFMFLTAL AVAGCGKQEA KGPAAPPVTE VGVVKVDLHD VPVAFEFVGQ
TESSQQVEIR ARVNGFLEQR LYTEGTMVKA GQVLFRMDQK PFKAALDAAM AELAQQQARL
TTARQNLARV RPLAAKNALS QKDLDDSVGQ EQGAAAAVEQ AKANVTNARL NLDYTTITAP
VSGLSSYAKK QVGSYIDASN SLLTYVAKLD PIWVNFSLSE NEVLQYQSQQ ASGQLKMPPR
GSMEVEIVLA DGATYGKRGH ITFADASFSS ETGTYLLRAE FPNTEGALRP GQFVRVRVLG
AERTRAITVP QAAVVQGQRG QFVWTVGKDN KAETRVVDVG EWAQGNWIIR SGLREGDTVV
VDGTVRLAPG APLKPVAAPP QPVSTERPPG SPGAAPTPAS APTAAPEKGA TS
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