| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1688 |
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| Symbol | |
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| ID | 4038491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1828105 |
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| End bp | 1829745 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637977070 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_583838 |
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| Protein GI | 94310628 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTGCAAT TCGTCGCTGG CTTTGTGGAA ACACCCAAGG CCTGCTGGCC ACATTCGTCA
TTGGGAATGG AATCATATGC CCAACCGCTA AGGCGTCGAG GTGTCAAAGC CATAGCTGCC
GGGGTCGTCG CCCTGACAGC ACTGATCGGC GGAAGCACGT TCGTCATGTT GCGGTTTGAC
GGATACGTGA AGGCAATCTA CGAGCACAAC ACCGCGCCGA TCAGAGAACT CGCAGAAATC
AGGGCACGTG CGACCGACAT CCGCCGCTTG CTCTGGCGGC TTGTTGCCTT GCGCGGCCGC
GAAGAGGAAC GCCAGGCCAT CGCGGCCATA CATGTGAATC TGAGGGCCAT CGACAACGCT
TGGGCCCGGT ATTGCGCGGA TGCGCCAGAC AATCAGCACG AGGACGTGCT CGCCACCGAG
ATCGGGCATC GGCTGACCTT GTTCAGCGGA ATCGTCCGGT CTTCGCTGGA GCGGATTTCC
TTCGGCGATC ACGATGACAC GCGCGACTGG CTGGAGCAGA ACGTCGAGGC GCTAAATCAG
CTGGATACGC TGATCGCGAG CGAGGTCGAT CTGAACGTCG CCATGGCGGC CGCGCTTCGG
CAGGAAAGTG CCACCATGCT GAGCGTGGCC ATCACCACCG CCTTCGCATT TGTGCTGCTG
GCGACTGGCG CGATGATTTC GATCGCTATC TTCACGCACC TGGTTCGCCA GCGTGACGAC
GCCATGGAGG AGTCGCGCTA TCACCTCTGG CTGGCGGACC AGGCCATCGA GATGACCCTG
GATGGCGTCA TGATTACGAA TGCGGAAGGG ACGATAGAAA AGGTGAACCC CGCATTTTGC
CGCCTCACGG GATACAGCCA GGCCGAACTG GTCGGCAACA ACCCTCGCAT GCTCAACTCC
GGACGACAGA CGAAGGAGTT TTATCGCGGA CTCTGGAAAG CGCTGAGAGA GGCGGGCCAG
TGGAAAGGCG AGCTGTGGAA TCGGCGCAAG GATGGTGGCG TGTACCTGGA GTCGTTGTCG
ATTGCGGGCA TTTGCGGGGC AAACCACGAG TACACGCATT TTGCTGCCAT CTGCACTGAC
ATTACGCATC GGCAACAGAC TGTAGAGCGG CTTGGCCATC TTGCCACCCA CGACATGCTG
ACAGGCCTGC CAAACCGGTT TCTGCTCGAC GAGCGCCTCA GCCAGGCGCT TGCCCGTGCC
AGGCGCATGC CACAGCCAGT TGCACTCATG TTCCTGGATC TGGACGGATT CAAGGCCGTC
AACGATACGC TGGGGCATGG CGTCGGCGAT GAGTTGCTCA TCCTGATTGG GCGGGATCTC
CAGAACGCGG TGCGCGATTC CGACACGGTT GCACGGATTG GTGGCGATGA GTTTGCCATC
GTTTTGGAAG GCATCGCGGA CCAGGACCAT CTCCCAATGC TGGCGCGGAG CCTTCTCCGG
ATGATCCGGT CCGCGCGGCA GATCGGCGAA CACCAGGTTT TCGTGACGTC CAGCATTGGC
ATCAGCGTGT ACCCGACGGA TGCATTGACA CCCGGAGAAC TGTTGAAAAA GGCGGATGTG
GCTATGTACC ACGCCAAGCG CAATGGAAAA GATGCGTTCT GTCTTGCCTC GTCAATCGGA
AGTGCGGAGG CCACGCTGTA A
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| Protein sequence | MLQFVAGFVE TPKACWPHSS LGMESYAQPL RRRGVKAIAA GVVALTALIG GSTFVMLRFD
GYVKAIYEHN TAPIRELAEI RARATDIRRL LWRLVALRGR EEERQAIAAI HVNLRAIDNA
WARYCADAPD NQHEDVLATE IGHRLTLFSG IVRSSLERIS FGDHDDTRDW LEQNVEALNQ
LDTLIASEVD LNVAMAAALR QESATMLSVA ITTAFAFVLL ATGAMISIAI FTHLVRQRDD
AMEESRYHLW LADQAIEMTL DGVMITNAEG TIEKVNPAFC RLTGYSQAEL VGNNPRMLNS
GRQTKEFYRG LWKALREAGQ WKGELWNRRK DGGVYLESLS IAGICGANHE YTHFAAICTD
ITHRQQTVER LGHLATHDML TGLPNRFLLD ERLSQALARA RRMPQPVALM FLDLDGFKAV
NDTLGHGVGD ELLILIGRDL QNAVRDSDTV ARIGGDEFAI VLEGIADQDH LPMLARSLLR
MIRSARQIGE HQVFVTSSIG ISVYPTDALT PGELLKKADV AMYHAKRNGK DAFCLASSIG
SAEATL
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