| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1683 |
|---|
| Symbol | |
|---|
| ID | 4038486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1820560 |
|---|
| End bp | 1821753 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637977065 |
|---|
| Product | multidrug ABC transporter permease component |
|---|
| Protein accession | YP_583833 |
|---|
| Protein GI | 94310623 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0017586 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCCG CGCCCAACGC CTCCACCCCT GCAGCCACTC CCGCTCGCGC CGATGCACGA
CGCGGCACGC TGCGCCATCT GGCGAACATC TACCGGCTCG GCGTCAAGGA GCTCTGGAGC
CTGGCGCGTG ACCCGATCAT GCTGGTGCTG ATCATCTACA CGTTCACGGC TTCGGTGTAC
ACGGCCGCCA CGGCCCAGCC CGATACGCTG CACATGGCGC CGATCGCCAT CGTTGACGAA
GACCATTCGC CGCTGTCGCA ACAGATCGCT TCCGCCCTCT TCCCGCCGCA GTTCACCATG
CCGCAAATGA TCACGTCGTC GGAAGTCAAC GCAGGCATGG ATGCTGGCAA CTACACGTTC
GCGCTCAATA TCCCCCCGAA TTTCCAGCGG GATGTCCTGG GCGGACGCTT CGCCGAGATT
CAGCTCAACG TCGACGCCAC GCGCATGAGC CAGGCATTTA CTGGCAGCGG TTACGTTCAG
CAGATCGTCT CGGGCGAAAT CCAGACGTTC GTGGACCGCT ACCGCTCCAC CACCCGGCTG
CCCGTGGAAC TGGCGCTGCG TGTGCGCTTC AACCCAACGC TGACACTGGC ATGGTTCGGC
GCGCTGAACC AGATCATCAA CAACATCACC ATGCTGTCGA TCATCCTGAC TGGCGCCGCG
TTGATCCGCG AGCGTGAGCA CGGCACGATC GAACACCTGC TGGTCATGCC CGTCACGCCG
TCGGAAATCA TGCTCAGCAA GGTCTGGTCT ATGGGGCTGG TGGTGCTGGT CGCCGCCGCC
ATGTCACTGA TGTTGATCGT GCGTGGCGCC CTGCACGTGC CGATCGCCGG GTCGGAAACG
CTCTTCCTGT GCGGCGCCGC GCTGCTCCTG TTCGCCACCA CCTCGATGGG CATCTTCATG
GCCACGCTGG CGCGCTCGAT GCCGCAGTTC GGCATGCTGC TCGTGCTCGT GCTGATGCCG
CTGCAGATGT TGTCCGGCGG GAATACGCCA CGCGAAAGCA TGCCGGAGAT TGTCCAGTAC
ATCATGCTGG CGGCGCCCAC CACCCACTTC GTGGAACTCA GCCAGGCGAT CCTGTTCCGT
GGTGCGGGCC TTGAGGTCGT GTGGGTGCAG TTCGTCGCGC TGTTCGTGAT CGGGGCGGCG
TTTTTCGTGA TATCGCTGCG GCGCTTCCGC AAGACGATCA GCCAGATGGC GTAA
|
|---|
| Protein sequence | MDAAPNASTP AATPARADAR RGTLRHLANI YRLGVKELWS LARDPIMLVL IIYTFTASVY
TAATAQPDTL HMAPIAIVDE DHSPLSQQIA SALFPPQFTM PQMITSSEVN AGMDAGNYTF
ALNIPPNFQR DVLGGRFAEI QLNVDATRMS QAFTGSGYVQ QIVSGEIQTF VDRYRSTTRL
PVELALRVRF NPTLTLAWFG ALNQIINNIT MLSIILTGAA LIREREHGTI EHLLVMPVTP
SEIMLSKVWS MGLVVLVAAA MSLMLIVRGA LHVPIAGSET LFLCGAALLL FATTSMGIFM
ATLARSMPQF GMLLVLVLMP LQMLSGGNTP RESMPEIVQY IMLAAPTTHF VELSQAILFR
GAGLEVVWVQ FVALFVIGAA FFVISLRRFR KTISQMA
|
|---|
| |