| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1620 |
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| Symbol | |
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| ID | 4038423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1746621 |
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| End bp | 1748324 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637977004 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_583772 |
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| Protein GI | 94310562 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.738779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC CACGCGAACG GAATGGCGGC CAGATTCTGG TCGAACAGCT GCGCATCCAG
GGCACGAAGC GCGTGTTCCT GGTGCCGGGC GAGAGCTATC TGCCGTGCAT CGACGCGCTC
TACGACCATC AGGATGCGAT CACGCCGATC GTCTGCCGGC AGGAGAGCGG CGCCGGATAC
ATGGCGGAGG CCTACGGCAA GCTGACCGGC GAGCCCGGCG TCTGTTTTGT CACGCGCGGC
CCGGGGGCGA CCAATGCGAG CATCGCGGTG CATACGGCGT TTCAGGACTC CACACCGATG
ATCCTGTTCG TCGGTCAGGT TGGAAACGAC TTCTACGAGC GCGAGGCATT CCAGGAGATC
GACTACCGTC GCATGTTCGG CCAGATGGCC AAGTGGGTGG CCCAGATCGA TCGCACGGAC
CGGATCCCCG AGTTCGTGGC GCGAGCCTAC GCGGTCGCAA CCAGCGGGCG TCCCGGTCCG
GTGGTGCTGG CGTTGCCCGA GGACACGCTC TGGGGCCGCG CCACGGTCGC CGACATGCCG
CGTTATGAGC GCGTCCACGG CGCCCCGACG CCGGTGGCGC TCGACAAGCT CTCCACCTTG
CTGGCTGGCG CGAAGCGGCC GTTCCTGCTG GTCGGGGGCT CGGGCTGGAC GCCCACGGCC
ATGCGGCAGA TCGAAGGCTT TGCCGAACGC TTCGGCCTGC CCGTGGGTGT GGCATGGCGA
CGTCTGGAAT GCTTCGACAA CGGACATCCG AACTTCGCCG GCCACGTCGG TTGGGGGATG
GTCGATGCGC TGCGCCAGCG GATTCACGAA GCGGATCTGG TGATCGCCGT GGGCACGCGC
ATGGGCGAGG CCACCACGGA AGGCTACACG CTGGTGGAAA GCCCGCAGCC ACGGCAGAAG
CTGGTGCACG TGTATCCCGA TCCGGACGAA CTCGGCCGGG TATTCCGCCC GACGTTGCCG
ATTGCCGCCG ATGTGGTGTC GTTCGCGGCG GCCGTGGCGC AGCTATCTCC GGCGCAGACG
GTATCCCGAG AGGCGATGAC GGCGGTGACG GCGGCCAATG CCAACTTCCT GGCGGAGCAG
GAGCCCAAGG ACGCCCCCGG CGCGTTGAAC CTGAACCGGG TGGCCTGCCA CGTGCGCGAC
CACGTGCCGG ACGATGCCTG CATCACTGTC GGCGCAGGCA ACTATGCGTT GTTCGCGCAC
GCCTATCACC GCTTCCATGG CGTGGGCACG AGCCTGGCGC CGACGGTAGG GTCGATGGGT
TACGGCTTGC CGGCCGCAAT CTCGGCCAAG CTCGAGAATC CGTCGCGTAC CGTGGTCTGC
TACGCGGGCG ATGGCTGCTT CCAGATGAAC CTGCAGGAAC TCGGCGTGGC CATGCAGTAT
CGGCTGGGCA TCGTGATCCT TGTTTTCAAC AACGGCATGT GGGGCACGAT CCGCGCGCAT
CAGGAACGCG AGTTCCCGGG CCGCACGATT GCGCTCGGCT TCGACAATCC CGAGTTCAGC
CAGCTGGTCA AGGCGTATCA CGGCCACGGC GAAGTGGTGG ATCGCGATGA GGATTTCGCC
CCCGCCTTTG CCCGGGCGCT GGAATTCGCC AATCGCGAGC AACTCCCCGC GCTGATCGAG
CTGCGCTACG AACCCGATGG TATCGCGCCC GGCGTCACGC TCTCCGGCAT TCGTGCCGCA
GCGCTGGCGC GGCAATCCGC CTGA
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| Protein sequence | MSAPRERNGG QILVEQLRIQ GTKRVFLVPG ESYLPCIDAL YDHQDAITPI VCRQESGAGY
MAEAYGKLTG EPGVCFVTRG PGATNASIAV HTAFQDSTPM ILFVGQVGND FYEREAFQEI
DYRRMFGQMA KWVAQIDRTD RIPEFVARAY AVATSGRPGP VVLALPEDTL WGRATVADMP
RYERVHGAPT PVALDKLSTL LAGAKRPFLL VGGSGWTPTA MRQIEGFAER FGLPVGVAWR
RLECFDNGHP NFAGHVGWGM VDALRQRIHE ADLVIAVGTR MGEATTEGYT LVESPQPRQK
LVHVYPDPDE LGRVFRPTLP IAADVVSFAA AVAQLSPAQT VSREAMTAVT AANANFLAEQ
EPKDAPGALN LNRVACHVRD HVPDDACITV GAGNYALFAH AYHRFHGVGT SLAPTVGSMG
YGLPAAISAK LENPSRTVVC YAGDGCFQMN LQELGVAMQY RLGIVILVFN NGMWGTIRAH
QEREFPGRTI ALGFDNPEFS QLVKAYHGHG EVVDRDEDFA PAFARALEFA NREQLPALIE
LRYEPDGIAP GVTLSGIRAA ALARQSA
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