| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1615 |
|---|
| Symbol | |
|---|
| ID | 4038418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1741484 |
|---|
| End bp | 1742506 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637976999 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_583767 |
|---|
| Protein GI | 94310557 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00450006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACGCGG AGGTTATCGT GAATTTTCTG TCTTTCTTTC TATCCCGGCT GGTCAAGGCA
CTGGTGGTGG TGATCGGCGT GGTCGTCATC AACTTCTTCC TGATCCGCAT GGCGCCCGGC
GATCCGGCCA CGGTGATGGC TGGCGAAGCT GGCGCTGGCG ATGCCACCTA TGTGACGCAG
TTGCGTGAGC AGTTCGGGCT GGACCAGCCT GTGCTGACGC AACTGGGCAT CTATCTCAAG
GGGGTGGCGA AGCTCGACCT CGGCTACTCG TATCGTAACC ACCTGCCGGT GCTGGACCTG
ATCCTCGATC GCCTGCCGGC CACCTTCTTG CTGATGAGCG GGGCATTCCT GTTCTCGATC
GTGATGGGGG TGCTGTTGGG CGTGATTGCG GCGCGAACGC GCTACGAAAA CCGCCGGCGC
TGGATTGACA GCGCGGTGAT GTCCGGCGCG TTGCTGCTGT ACGCCACGCC GTTGTTCTGG
CTCTCGCTGA TGGCCATCAT CCTGTTCTCC GTGGTGCTCG GCTGGTTGCC TGCTTTCGGC
ATGGAGAGCG TCGGGGCCGG ATACACGGGA CTGGCCCGCG TGCAGGATAT CGCGCTCCAT
CTGGTGCTGC CGACGATTTC GTTGGGCTGC TTCTTCATGG CTGTCTACGT GCGACTGACG
CGGGCTTCGA TGCTCGAGGT CATGGGCATG GACTTCGTCA AGACGGCGCG CGCCAAGGGT
GTGCCGGCCC GCCGCGTGAT TCGTGTGCAT GTGCTGCGTA ACGCGCTGCT GCCCGTCATC
ACGTTTGCTG GCATCCAGCT TGGCCAGATG GCCGGTGGCG CGGTGCTGAC CGAAACCGTG
TTCTCGTGGC CTGGTATTGG CCGGCTGATG TTCGATGCGC TGCTGCAACG CGACTACCAG
TTGCTGCTCG GCATCTTCTT CGTGACATCG GCGCTGGTGG TGTTCTTCAA CCTGGTGACC
GACGTGGTCT ACCGCTTCAT CGACCCCCGT ATCGCCATCG GCGGCAAGGA GGCCACGGCA
TGA
|
|---|
| Protein sequence | MHAEVIVNFL SFFLSRLVKA LVVVIGVVVI NFFLIRMAPG DPATVMAGEA GAGDATYVTQ
LREQFGLDQP VLTQLGIYLK GVAKLDLGYS YRNHLPVLDL ILDRLPATFL LMSGAFLFSI
VMGVLLGVIA ARTRYENRRR WIDSAVMSGA LLLYATPLFW LSLMAIILFS VVLGWLPAFG
MESVGAGYTG LARVQDIALH LVLPTISLGC FFMAVYVRLT RASMLEVMGM DFVKTARAKG
VPARRVIRVH VLRNALLPVI TFAGIQLGQM AGGAVLTETV FSWPGIGRLM FDALLQRDYQ
LLLGIFFVTS ALVVFFNLVT DVVYRFIDPR IAIGGKEATA
|
|---|
| |