| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1609 |
|---|
| Symbol | |
|---|
| ID | 4038412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1735391 |
|---|
| End bp | 1737100 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976993 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_583761 |
|---|
| Protein GI | 94310551 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0318445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGCTC CGCGATGGGG ACATCGAAAA AAAACAGCAT CAGCACGGAT GGAAAATTAT
CCGATGGTTG GTACCATCGG TAGGTCCATA TCCTGTTTTT TGCCCGGAGC CACTTTGAAA
GAGACGATTC TTTCCGACCT GCTGCTTCAG CGACTTGAGC GCCCCGCTGG TGCAGTCACC
GGCAAATCGG GCGAGCATAT GAACCGACAG CTCTACGCCA TCATCCGTCA GGAGATCCTT
GCAGGTGCTG TGCCAGCGGG TAGCAAGCTG CCGGCGTCGC GCCTGCTGGC CAAGGAAATC
GGTGTCTCGC GCAACACCGT CCTGTATGCG TACGAGCAGT TATTGGCCGA AGGCTATGTG
ACCGCATCCA CCGGAAGTGG CACCTTCGTG TCGCATACCG TTCCCGACCA TCGTGCATTG
CACAACGGGA GTGCGGCGAA TGGCACCATC ACTGTGCCCG CAGTGCAGCA ACACCCAAAC
CGATTCGCGC TGTCGCGACG CGGGCAGCAT CTGGTGTCCC ACGCCAGCGC GTCGGATCGC
CAATGGGGCG CGTTCGTCGC AGGCGTGCCT GATGTCTCGC TATTTCCACA CGCGGTCTGG
GCGCGCCTGC TGAACAAGCA CTGGCGCAAT CCAAGCCCGC AGTTGCTGAC GTACGCGCAT
CACGGCGGCT ACCTGCCGCT GAAGAAGCTG CTGGCCGAAC ACCTGCGTCT AGTGCGTTCC
GTGCGCTGCG AGCCGGACCA GATCATCCTG ACCACCGGCA TCCACCAGGC CGTGGACCTG
ACCACCCGGC TGCTGGCCGA CCCCGGCGAC AAGGCATGGA TGGAAGATCC CGGCTACTGG
GGCACACGCA GCCTGCTGGC AAGCGCGGGC GTGGAGCCAA TCCCGGTACC GGTCGACGAT
GAAGGGATCG CGCCAAGCCC CGCGACGCTA CAGAATCCGC CACGCTTCAT CTTCGTCACG
CCTTCGCACC AGTATCCGCT TGGCATGATG ATGAGCCTCT CGCGCCGGCG CATGTTGCTC
GAATACGCGC GGCAGCGCGG TGCATGGATC ATCGAGGACG ACTACGACAG CGAGTTCCGT
TTCGAAGGCA GGCCGGTGGC GTCGTTGCAG GGGCTGGACG ACAACGATCG CGTGATCTAC
ATGGGCACGT TCTCGAAGAC GCTCTTCCCG GGCATACGCA TGGGCTTCAT GGTGTTGCCC
AAGCCGCTGG CGCCCCACTT CGCCACGGGG CTGTCCGAGC TCTATCGCGA AGGCCAGCTC
GTGCAGCAGG CGGTGCTGGC GGACTTCATC GAGGAAGGCC ACTACGCCAC GCATATCCGT
CGGATGCGCC AGCGGTACGC GCAGCGCCAG GCGCTGTTAC GCGAAGCCAT CGCCAACCGC
TTCGGCGCCG ACTGGCCCAC ATCCACGCAT GAGGCCGGCC TGCACATGGT GATGCATCTG
CCGCGCGGCG CCGATGATCT TGGCATCAGC ATGGCCGCGC GCACGCAGGG GCTATCGGCC
CGGCCGCTTT CGCGCTACTA CAGCGAGGGG GCGGCGACGC AACAAGGGCT GCTGCTCGGC
TACGCGTGCG TGCCCGAAGC CGAGATCGGT CCGGCCTTCC GCAAACTGGC CGAAGTCATC
GAGCCGGCGC TGGAACATCT GGCGCGCACC CAGGAGCCGC CAAAACCGAT TGCCGCGAGG
ATCAATGCAG AAGCGTGGAG CGGCGCTTGA
|
|---|
| Protein sequence | MGAPRWGHRK KTASARMENY PMVGTIGRSI SCFLPGATLK ETILSDLLLQ RLERPAGAVT
GKSGEHMNRQ LYAIIRQEIL AGAVPAGSKL PASRLLAKEI GVSRNTVLYA YEQLLAEGYV
TASTGSGTFV SHTVPDHRAL HNGSAANGTI TVPAVQQHPN RFALSRRGQH LVSHASASDR
QWGAFVAGVP DVSLFPHAVW ARLLNKHWRN PSPQLLTYAH HGGYLPLKKL LAEHLRLVRS
VRCEPDQIIL TTGIHQAVDL TTRLLADPGD KAWMEDPGYW GTRSLLASAG VEPIPVPVDD
EGIAPSPATL QNPPRFIFVT PSHQYPLGMM MSLSRRRMLL EYARQRGAWI IEDDYDSEFR
FEGRPVASLQ GLDDNDRVIY MGTFSKTLFP GIRMGFMVLP KPLAPHFATG LSELYREGQL
VQQAVLADFI EEGHYATHIR RMRQRYAQRQ ALLREAIANR FGADWPTSTH EAGLHMVMHL
PRGADDLGIS MAARTQGLSA RPLSRYYSEG AATQQGLLLG YACVPEAEIG PAFRKLAEVI
EPALEHLART QEPPKPIAAR INAEAWSGA
|
|---|
| |