| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1588 |
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| Symbol | |
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| ID | 4038391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1711364 |
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| End bp | 1713265 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637976972 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_583740 |
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| Protein GI | 94310530 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00103997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.3831 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCATCA GCCGTCTCTC TCGCGCCTTT GCCGAACTGA TTCCGGCCTA CGCGGGCCGG
GCGGAATTCC GGATCGTTGG CCGGGCCTTC GAAGCCGCGG CCAGCGCCAT CAACCGGGAG
GCACGGGAGA ACCGCGTCGA TGTGGTGGTG GCGGGCGGAT CGAACGGCGC CTACCTGCGC
CAGCATGTCG ACGTGCCGGT GGTGCTGGTC AAGGTGACCG GCTTCGACGT CATGAGCGCG
TTAGCCACCG CCCGGCGCAT TTCGCCGAAG GTGGCGCTGG TGACGCATGC CTCCACCTAC
GCCGAGGTCG ACGAGTTTGT ACGGGCCTTC TCGCTCGATA TCCCGCGCTA CACCTATCTG
ACTGAAGACG ATGCGACCGC ACGTGTACGG GCGCTCAAGG AGGAGGGCGT GCGCGTGGTG
GTCGGCCCGG GCCTGGTGAC AGACATGGCC GACAAGTACG GGCTCGTCGG CGTGTTTCTC
TACTCGGGCA ATGCCGTGCG GCTGGCGCTG GAGGATGCAA TCGAGGCCGC GCGGTTGCGT
CGTATCGAAT CCACGCGACG CGAATACGTG AACACGATTC TTGCCCACCT GAACGAAGGC
GTGGCTGCGG TAGACGGCGA GGGGCGGGTG CAGGCGTTCA ATCCGGCGAT GGAGCGATTC
CTCGGCACGC CTGCCGGGGT TGCGGTGGGT CGCAAGCTAT CCACGCTGGC GCCCGGACTG
TCCCTCGACG GCGTGATGCA GAGCGGCGCG CGCGAGCTCG AAGCAATCCA TCGGTTGGGC
GACAAGATGG TGGTCGTCAA CCGGATTCCG ATCATGAGCG AGGCCGGCAC GACAGGCGCC
GTGCTGACGA TCCAGGACGC CAACGCGATT CACCGCGCGG ACCGCAACCT GCGCTCGCGC
ACACGCGCCC GGGCGGCGGG CGTGCGTTAC AGCCTGGACG ACCTGGCGGG CGATTCGCCG
GCGATGAGCG ATCTGCGTGC GCTGGCGCGG CGCTATGCGA TGGTCGATTC GACCGTTCTG
GTCAGCGGCG AAAGCGGTAC CGGCAAGGAA GTGCTGGCGC AGGGGATGCA CGACGCGAGT
CCGCGCCGCG CCTTTCCCTT CGTGGCGGTC AACTGCGCGG CCTTCCCCGA GACGCTGCTC
GAGTCCGAGC TGTTCGGCTA CGAGGAAGGG GCGTTCACGG GCGCCCGGCG TGGCGGCAAG
GCCGGCCTGT TCGAGTCGGC GCATAACGGC ACGCTGTTTC TCGACGAGAT CGGCGATATG
CCGCCGGCGC TGCAAACGCG CCTGCTGCGT GTGCTGCAGG AGAAACAGGT GCTGCCAATC
GGCGCGATCG AGGCCGTGCC GGTCAATGTG CGCGTGATCG CCGCCACGCA CCGCGACCTG
GCCGCGCTCG TGCGCGATGG GGCATTCCGC CAGGATCTCT ACTACCGCCT GAACATCCTC
CGCATCGAGA TGCCGCCTTT GCGCGACCGC GCGGGAGACC TGCCCGTGCT GGCGGAACTG
CTCTACCGGC GTGCGCAGGA ACGGCTTGGC ATGTCGGATG GGGAACCGCT ACCCGCGATC
GTGCGGGCAC GCCTGGCGCG TTACGTGTGG CCGGGGAATA TTCGCGAACT CGAAAACGTG
ACCGAGCGGA TTGCAGTGCT TGTGGCCGGC GCGAACCTGA CACCTGTGGC GCTGCAGCGG
GAGTTGCAGG CGGCGGTGCC GGAACTGTTT TCTGGTGATC ACGGGACGGC CATCGAAATG
TCCGACGGCG TGCCCGCGCA ATCGCTGGCA GGGGTGGCCA AGGCAAGCCA GGCCGAGCAT
ATCCGCCGTG TGCTGGCCGA TTGCGGCGGT AACCGCGCGG CGGCCTGCGC GCAGCTAGGC
ATCAGTCCGA CAACACTTTG GAGACGGTTG CGCGAGGAGT GA
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| Protein sequence | MGISRLSRAF AELIPAYAGR AEFRIVGRAF EAAASAINRE ARENRVDVVV AGGSNGAYLR
QHVDVPVVLV KVTGFDVMSA LATARRISPK VALVTHASTY AEVDEFVRAF SLDIPRYTYL
TEDDATARVR ALKEEGVRVV VGPGLVTDMA DKYGLVGVFL YSGNAVRLAL EDAIEAARLR
RIESTRREYV NTILAHLNEG VAAVDGEGRV QAFNPAMERF LGTPAGVAVG RKLSTLAPGL
SLDGVMQSGA RELEAIHRLG DKMVVVNRIP IMSEAGTTGA VLTIQDANAI HRADRNLRSR
TRARAAGVRY SLDDLAGDSP AMSDLRALAR RYAMVDSTVL VSGESGTGKE VLAQGMHDAS
PRRAFPFVAV NCAAFPETLL ESELFGYEEG AFTGARRGGK AGLFESAHNG TLFLDEIGDM
PPALQTRLLR VLQEKQVLPI GAIEAVPVNV RVIAATHRDL AALVRDGAFR QDLYYRLNIL
RIEMPPLRDR AGDLPVLAEL LYRRAQERLG MSDGEPLPAI VRARLARYVW PGNIRELENV
TERIAVLVAG ANLTPVALQR ELQAAVPELF SGDHGTAIEM SDGVPAQSLA GVAKASQAEH
IRRVLADCGG NRAAACAQLG ISPTTLWRRL REE
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