| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1587 |
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| Symbol | prpB |
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| ID | 4038390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1710063 |
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| End bp | 1710971 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637976971 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_583739 |
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| Protein GI | 94310529 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000235696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.470108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCTTTA CCGCCACCGA ACTCGCCCGC TCCGCCGGCG CACGCTTCCG CCAGGCCCTG
ATCGATGAAA GCCCCCTGCA GATCCCGGGC ACCATCAATG CCAATCACGC GCTGCTGGCC
AAGCGGGCCG GTTATCGCGC GATCTACCTG TCGGGCGGCG GCGTGGCCGC TGGCTCGCTG
GGTCTGCCTG ACCTGGGCAT CTCGAACCTG GACGACGTGC TGACCGACAT CCGCCGCATC
ACCGACGTGT GCGACACGCC GCTGCTGGTC GACGTCGACA CCGGCTTCGG CGCCTCGGCA
TTCAACGTGG CCCGCACCAC GCGCTCGCTG ATCAAGTTCG GCGCAGCCGC CATGCATATC
GAAGACCAGG TCGGCGCCAA GCGCTGCGGC CACCGTCCGA ACAAGGAAAT CGTCACCAAG
GGTGAAATGG TCGACCGCAT CCGTGCCGCC GTCGATGCAC GTACGGACGA GAACTTCGTC
ATCATGGCCC GCACCGACGC GCTGGCCGTC GAAGGCCTCG ACAGCGCGAT CGAACGCGCC
GTGGCCTGCG TGGAAGCCGG CGCCGACGCC ATCTTCCCCG AGGCGATGAC CGACATGGAC
ATGTACCGCA AGTTCGTCGA TGCCGTGAAG GTACCCGTGC TGGCCAACCT GACCGAATTC
GGCGCCACGC CGTACTACAC GCTGGATGAA CTGCGCAACG CCGGCGTTGC CATGGCGCTC
TACCCGCTGT CGGCGTTCCG CGCCATGAAC AAGGCGGCCG AGAATGTCTT CCAGGCGATC
CGCCGCGAGG GCACCCAGAA GAACGTGGTC GACACGATGC AGACGCGCGC CGAACTGTAC
GATCGCATCG GCTACCATGA CTTCGAGCAG AAGCTCGACG CGCTCTTCGC ACAAGGCAAG
GGCCGCTGA
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| Protein sequence | MTFTATELAR SAGARFRQAL IDESPLQIPG TINANHALLA KRAGYRAIYL SGGGVAAGSL
GLPDLGISNL DDVLTDIRRI TDVCDTPLLV DVDTGFGASA FNVARTTRSL IKFGAAAMHI
EDQVGAKRCG HRPNKEIVTK GEMVDRIRAA VDARTDENFV IMARTDALAV EGLDSAIERA
VACVEAGADA IFPEAMTDMD MYRKFVDAVK VPVLANLTEF GATPYYTLDE LRNAGVAMAL
YPLSAFRAMN KAAENVFQAI RREGTQKNVV DTMQTRAELY DRIGYHDFEQ KLDALFAQGK
GR
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