| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1586 |
|---|
| Symbol | |
|---|
| ID | 4038389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1708847 |
|---|
| End bp | 1710004 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976970 |
|---|
| Product | methylcitrate synthase |
|---|
| Protein accession | YP_583738 |
|---|
| Protein GI | 94310528 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0372] Citrate synthase |
|---|
| TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000154256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.49975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAG CCCAACCGCT GGCCACCCCG AAGCCCAAGA AGTCCGTTGC CCTGTCAGGT
ATCGCCGCCG GCAATACCGC ACTGTGCACC GTGGGACGCA GCGGCAATGA CCTGCACTAT
CGTGGCTACG ACATCCTCGA CATCGCCGAC ACCTGCGAAT TCGAGGAAAT CGCTCACCTT
CTGGTCCACG GCAAGCTGCC GACCAAGTCC GAACTGGCCG CCTACAAGGT CAAGCTGAAG
GCACTGCGCG GCCTGCCCGC CAACGTAAAG GCCGCCCTGG AATGGGTGCC GGCCAGCGCC
CACCCGATGG ACGTGATGCG CACTGGCGTG TCGGTGCTGG GCACCGTGCT GCCGGAAAAG
GACGACCACA ACACCCCGGG CGCGCGTGAC ATCGCCGACC GCCTGATGGC CAGCCTCGGC
TCTATGCTGC TGTACTGGTA CCACTACAGC CACAACGGCC GCCGCATCGA AGTGGAAACC
GATGACGACT CGATCGCCGC CCACTTCCTG CACCTGCTGC ACGGCGAAGC CCCGTCGAAG
CTGTGGGAAC GCGCGATGCA GACTTCGCTG ATCCTGTATG CAGAGCACGA GTTCAACGCC
TCGACGTTCG CCTGCCGCGT GGTGGCTGGC ACGGGCTCCG ACATGTACTC GGCCATCTGC
GGCGGCATCG GCGCGCTGCG TGGTCCGAAG CACGGCGGCG CCAACGAAGT GGCCTTCGAG
ATCCAGAAGC GCTACGACAC GCCGGACGAG GCAGAGGCCG ACATCCGTCG CCGCGTGGAG
AACAAGGAAG TGGTGATCGG TTTCGGTCAC CCCGTGTACA CGATCTCCGA CCCGCGTAAC
GTGGTGATCA AGGAAGTGGC GCGCAAGCTG TCGAAGGACG CCGGTTCGAT GAAGATGTTC
AACATCGCCG AGCGCCTGGA AACGGTGATG GCCGACGCCA AGAAGATGTT CCCGAACCTG
GACTGGTTCA GCGCGGTGAG CTACCACATG ATGGGTGTGC CGACCGCGAT GTTCACGCCG
CTGTTCGTGA TCGCCCGTAC CTCGGGCTGG GCCGCGCACG TGATCGAGCA ACGGGTCGAC
AACAAGATCA TCCGCCCGAC CGCCAACTAC ACCGGCCCGG AAAACCTGAA GTTCGTGCCG
ATCGAAAAAC GCGCCTGA
|
|---|
| Protein sequence | MSEAQPLATP KPKKSVALSG IAAGNTALCT VGRSGNDLHY RGYDILDIAD TCEFEEIAHL
LVHGKLPTKS ELAAYKVKLK ALRGLPANVK AALEWVPASA HPMDVMRTGV SVLGTVLPEK
DDHNTPGARD IADRLMASLG SMLLYWYHYS HNGRRIEVET DDDSIAAHFL HLLHGEAPSK
LWERAMQTSL ILYAEHEFNA STFACRVVAG TGSDMYSAIC GGIGALRGPK HGGANEVAFE
IQKRYDTPDE AEADIRRRVE NKEVVIGFGH PVYTISDPRN VVIKEVARKL SKDAGSMKMF
NIAERLETVM ADAKKMFPNL DWFSAVSYHM MGVPTAMFTP LFVIARTSGW AAHVIEQRVD
NKIIRPTANY TGPENLKFVP IEKRA
|
|---|
| |