Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1564 |
Symbol | |
ID | 4038367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1685010 |
End bp | 1685846 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637976948 |
Product | integrase catalytic subunit |
Protein accession | YP_583716 |
Protein GI | 94310506 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.403634 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTCGAAC TGAGGCAACA CTATGATTTG GCGGCGCTAC TGAAGGTTGC TGGACTGTCG CGCAGCACGT TCTATTACCA GGCCAAGGTT ATCGGGGCCG GCGATAGGTA CGCCGACTTG AAGGCGCGTA TCCAGAGCAT CTACGACCAT CATAAGGGCC GTTATGGCTA CCGGCGGATC ACGGCGGCAC TACGACGATC TGGCGAGACG ATCAATCACA AGGTGGTCCA GCGGTTGATG CAGTCACTGG GCCTGAGATC CTTGGTTCGG CCAAAGAAGT ACCGCTCATA CCGAGGGCCA GGTCACGTGT CCGTGCCTAA CCTGTTGCAG AGGCAGTTCC AAGCCAGGCG CCCGAATGAG AAGTGGGTGA CGGACGTGAC CGAATTCAAT GTCGGCGGCG ACAAACTCTA CCTCTCGCCT GTTATGGACC TATACAACGG GGAAATCGTG GCCTATCAGA CCAGCCGGCG ACCGCACTTC AGCCTGGTTG GCACGATGCT CAGGAAGGCA TTGAACAAGC TCTCCAGTGC TCAACGGCCG CTGCTGCATT CCGATCAGGG TTGGCAATAC CAGATGCCGG CCTACCGGCG GGTGCTGGCC GAGCACGGGG TGACAAAAAG CATGTCACGT AGGGGAAATT GCCTGGACAA CGCCGCCATG GAGAGCTTCT TTGGAACGCT CAAATCCGAA TGCTTCTATC TGAGCAAGTT CACCGCCATT GACCAGTTGC AGGATGCCTT GCGCCGCTAT ATCCACTACT ACAATCACCA CCGCATCAGG ACCAAACTAA AAGGGCTGAG TCCTGTGCAA TACAGGACTC AGCCCTCTAT GGCTTAG
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Protein sequence | MLELRQHYDL AALLKVAGLS RSTFYYQAKV IGAGDRYADL KARIQSIYDH HKGRYGYRRI TAALRRSGET INHKVVQRLM QSLGLRSLVR PKKYRSYRGP GHVSVPNLLQ RQFQARRPNE KWVTDVTEFN VGGDKLYLSP VMDLYNGEIV AYQTSRRPHF SLVGTMLRKA LNKLSSAQRP LLHSDQGWQY QMPAYRRVLA EHGVTKSMSR RGNCLDNAAM ESFFGTLKSE CFYLSKFTAI DQLQDALRRY IHYYNHHRIR TKLKGLSPVQ YRTQPSMA
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