Gene Rmet_1564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1564 
Symbol 
ID4038367 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1685010 
End bp1685846 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content57% 
IMG OID637976948 
Productintegrase catalytic subunit 
Protein accessionYP_583716 
Protein GI94310506 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.403634 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCGAAC TGAGGCAACA CTATGATTTG GCGGCGCTAC TGAAGGTTGC TGGACTGTCG 
CGCAGCACGT TCTATTACCA GGCCAAGGTT ATCGGGGCCG GCGATAGGTA CGCCGACTTG
AAGGCGCGTA TCCAGAGCAT CTACGACCAT CATAAGGGCC GTTATGGCTA CCGGCGGATC
ACGGCGGCAC TACGACGATC TGGCGAGACG ATCAATCACA AGGTGGTCCA GCGGTTGATG
CAGTCACTGG GCCTGAGATC CTTGGTTCGG CCAAAGAAGT ACCGCTCATA CCGAGGGCCA
GGTCACGTGT CCGTGCCTAA CCTGTTGCAG AGGCAGTTCC AAGCCAGGCG CCCGAATGAG
AAGTGGGTGA CGGACGTGAC CGAATTCAAT GTCGGCGGCG ACAAACTCTA CCTCTCGCCT
GTTATGGACC TATACAACGG GGAAATCGTG GCCTATCAGA CCAGCCGGCG ACCGCACTTC
AGCCTGGTTG GCACGATGCT CAGGAAGGCA TTGAACAAGC TCTCCAGTGC TCAACGGCCG
CTGCTGCATT CCGATCAGGG TTGGCAATAC CAGATGCCGG CCTACCGGCG GGTGCTGGCC
GAGCACGGGG TGACAAAAAG CATGTCACGT AGGGGAAATT GCCTGGACAA CGCCGCCATG
GAGAGCTTCT TTGGAACGCT CAAATCCGAA TGCTTCTATC TGAGCAAGTT CACCGCCATT
GACCAGTTGC AGGATGCCTT GCGCCGCTAT ATCCACTACT ACAATCACCA CCGCATCAGG
ACCAAACTAA AAGGGCTGAG TCCTGTGCAA TACAGGACTC AGCCCTCTAT GGCTTAG
 
Protein sequence
MLELRQHYDL AALLKVAGLS RSTFYYQAKV IGAGDRYADL KARIQSIYDH HKGRYGYRRI 
TAALRRSGET INHKVVQRLM QSLGLRSLVR PKKYRSYRGP GHVSVPNLLQ RQFQARRPNE
KWVTDVTEFN VGGDKLYLSP VMDLYNGEIV AYQTSRRPHF SLVGTMLRKA LNKLSSAQRP
LLHSDQGWQY QMPAYRRVLA EHGVTKSMSR RGNCLDNAAM ESFFGTLKSE CFYLSKFTAI
DQLQDALRRY IHYYNHHRIR TKLKGLSPVQ YRTQPSMA