| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1554 |
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| Symbol | |
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| ID | 4038357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1676750 |
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| End bp | 1677475 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637976938 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_583706 |
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| Protein GI | 94310496 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000179066 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAGC GCCTTATCGC CGCCGCCATC GCGGCCATGC TTTGCACCGC CACCGCCCAT
GCGCAATGGG TCGTGATCGA CCCCACGAAC CTCGTGCAGA ACACGCTGAC CGCGATCCGC
ACACTGGAGC AGATCAATAA CCAGATCAAG CAGCTTCAGA ACGAAGCACA GATGCTCATC
AATCAGGCGC GCAACCTGGC CAGCCTGCCG TCCAGCGTGG TGAACCAGTT GCGCACCAAT
CTGGCGACGA CCGAGCGGCT GATCGCCCAA GCTCGCGGCT TGGCCTACGA CGTGACGAAT
CTGGATCGGG AGTTTCAGCG CCTGTATCCC GAGCAGTACG CTGCCACGGT GAGCGGCGAC
CAGATGTACC GCGACGCGCA GGAGCGTTGG AAGAACACGC TCAATGGCTT GCAGACCACG
ATGCAGATGC AGGCCCAGGC ATCGCAGAAC CTCCATGATG ATGAAGGCGT GCTGGCCGAT
CTGGTCGGCA AGAGCCAGTC CGCCGTTGGC GCACTGCAAG CCATGCAGGC CACGAACCAA
CTGCTGGCCT TGCAAGCCAA GCAGTCCATC CAGACCCAGC GGCTCCAGAT CACGCAGGAC
CGGGCGGCGT CGCTGGAGCT GGCGCGGCAG GCGGCGGCCA CGGAGCGCGC CCGCGAGGTG
CGGCGGCGTT TCCTCGGTGA AGGTACGCCG TACACGCCGC AGTCCGTGAA CTTCTACGGC
AACTGA
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| Protein sequence | MKKRLIAAAI AAMLCTATAH AQWVVIDPTN LVQNTLTAIR TLEQINNQIK QLQNEAQMLI
NQARNLASLP SSVVNQLRTN LATTERLIAQ ARGLAYDVTN LDREFQRLYP EQYAATVSGD
QMYRDAQERW KNTLNGLQTT MQMQAQASQN LHDDEGVLAD LVGKSQSAVG ALQAMQATNQ
LLALQAKQSI QTQRLQITQD RAASLELARQ AAATERAREV RRRFLGEGTP YTPQSVNFYG
N
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