| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1553 |
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| Symbol | |
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| ID | 4038356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1674324 |
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| End bp | 1676753 |
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| Gene Length | 2430 bp |
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| Protein Length | 809 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637976937 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_583705 |
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| Protein GI | 94310495 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.215631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TCGCCGAATA CCGCCAGCGC CCGGCCTTGC TTGCCGACTG GCTGCCCTGG
GCCGGACTGG TCGCGCCGGG CATCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACGGCC
CGGTTTCGCG GGCCTGACCT CGACAGCGCG ACGCAAGGCG AGCTGATTGC CACGTCGGCA
CGGCTGAACA ACGCATTGCG CCGGCTGGGT TCTGGCTGGG CCTTGTTCAT CGAGGCCGAG
CGCCGCGCCG CTGCCGACTA TCCGCGCTCG GAGTTTCCCG AGCCGCTTTC GTGGGTGGTG
GAGGAAGAAC GCCGGGCCGC CTTCGAGGAC TCGGGCAATC ACTTCGAGAG CGGCTACCAC
CTGACGCTGC TTTACCTGCC GCCGGAAGAA TCCCGCGCCC GTGCAGCCAA GATGCTCTAC
GAGAACACGC CGACGAATGG CGTGGACTGG CGCGAGCGGC TGCAAGCCTT CGTCGCGGAA
ACGGATCGCG TCTTTGACCT GCTCGACGGC GTGATGCCGG AAGTTGACTG GCTCGATGAC
GCGCAGACGC TGACCTACCT GCACGCGACC ATCTCGACGC GGCGCTATTC GCTGGCGGTG
CCCGAAGTGC CGTTCCACAT CGACGCGCTG CTGACCGACT CGCCGCTGGT CGGTGGCCTG
GCGCCCATGC TGGGCGACCA GCACCTGCGC GTGGTGTCAG TGCGGGGCTT CCCAACCTCG
ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCCTCGGTT TTGCGTACCG CTGGAGCACG
CGCTTTCTCT GCCTCGACAA AGCCGAGGCG GAGAAAGAGC TTTCCCGCCT GCGCCGCCAG
TGGTTCGCCA AGCGCAAGAA CGTCATCGCG CTGCTGCGCG AAACGATCTT CCAGCAGGAA
AGCCCGCTGG TCGATACCGA CGCCAACAAC AAGGCCGCCG ATGCCGACGC CGCCTTGCAG
GAGCTGGGCA GCGATCAAGT CGCCTTCGGC TACCTGACGG CGACCGTGAC CGTCATGGAC
ACGGACGCCG CCGTGGCGGA CGAGAAGCTG CGCATGGTGG AGCGTGTCAT CCAGGGTCGG
GGTTTCGTCA CCATCCCCGA AACGCTCAAC GCCGTGGATG CCTGGTTGTC CTCGATCCCC
GGCAATGCCT ACGCCAACGT GCGCCAGCCC ATCGTCTCGA CGTTGAACCT GGCGCACCTG
ATGCCGGTGT CGGCGGTATG GGCTGGCCCC GAGCGCAATG ACCACCTCGA CGGCCCGCCG
CTGATCGTCA CGCGCACCGA TGGCGCCACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTGGC CGGGCCGACC GGCATGGGCA AATCGGTGCT GCTCGCCACC
TTGGCAATGC AGTTCCGGCG CTACCCCGGC TCGCGCATCT TCGCCTTCGA CATGGGGCGC
TCGATGCGGG CCACCATCCT GGGCCTCGGT GGCGAGCACT ACGACCTGGG CACGGATGGC
GAAATCGCCT TCCAGCCGCT CGCGCGCATC GACCGCGAGG GCTACCGCAC CTGGGCGGCC
GAATGGATCG AGGGCCGCTT GCTGCACGAA GGCGTGGCTG TCGGCCCAGA GGAGAAGGCG
GCCATCTGGT CGGCGCTGGG AAGTCTCGCC GGTGCGCCGG TGGAGCAGCG CACGATGACG
GGCCTGTCGG TGCTGTTGCA ATCGAATGCG CTGCGCCAGG CGCTGTCGCC CTATGTGCTC
GGTGGCGCCC ACGGCAAGCT GCTGGACGCC GACCACGACC GGCTCGGTAT GGCCGACGTG
CAGTGCTTCG AGATGGAGGA GCTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGCAT
TACCTCTTTG CACGCTTCGA TGAACGCTTC GACGGGGCGC CCACGCTGCT GATCCTCGAT
GAAGCGTGGT TGTTTCTCGA TGACCCGGTG TTTGCCGCGC GTATCCGGCA ATGGCTCAAG
ACGCTGCGCA AGAAGAACGT GAGCGTCATC TTCGCCACGC AGAGCTTGGC CGACATCAAG
GATTCGAGCA TCGCCCCGGC CATCATCGAG AGCTGCGCGA GCCGCATCTT CCTGCCGAAC
CCGCAGGCGA CCGAACCGCA GATTCACACG ATCTACGAGG GCTTCGGGCT CAACAGGCGG
CAGATCGAAA TCGTCGCCAC TGCGCAGCCC AAACGCGACT ACTACTACCA ATCACGCCTC
GGCAACCGCC TATTCGACCT CGACCTGGGG CCGGCGGCGC TGGCCTTCGC GGGCGCGTCC
ACGCCGCAAG ACCAGCGCGA CATGGATCGC GTGCTGCTGG ACGCCGGCGT GCCCGGCTTC
GCGGACGCCT GGCTGCGCCA TCGCGGCCTC GATTGGGCGG CTGACCTGCT GCCTTCGTTC
ACCGACCACC CACAGGAGAA CCTGCCATGA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGIVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRLG SGWALFIEAE RRAAADYPRS EFPEPLSWVV EEERRAAFED SGNHFESGYH
LTLLYLPPEE SRARAAKMLY ENTPTNGVDW RERLQAFVAE TDRVFDLLDG VMPEVDWLDD
AQTLTYLHAT ISTRRYSLAV PEVPFHIDAL LTDSPLVGGL APMLGDQHLR VVSVRGFPTS
TWPGILDDLN RLGFAYRWST RFLCLDKAEA EKELSRLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDANN KAADADAALQ ELGSDQVAFG YLTATVTVMD TDAAVADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHL MPVSAVWAGP ERNDHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LAMQFRRYPG SRIFAFDMGR
SMRATILGLG GEHYDLGTDG EIAFQPLARI DREGYRTWAA EWIEGRLLHE GVAVGPEEKA
AIWSALGSLA GAPVEQRTMT GLSVLLQSNA LRQALSPYVL GGAHGKLLDA DHDRLGMADV
QCFEMEELMH SKAAVMAVLH YLFARFDERF DGAPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIHT IYEGFGLNRR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PAALAFAGAS TPQDQRDMDR VLLDAGVPGF
ADAWLRHRGL DWAADLLPSF TDHPQENLP
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