| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1550 |
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| Symbol | |
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| ID | 4038353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1672583 |
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| End bp | 1673659 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637976934 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_583702 |
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| Protein GI | 94310492 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00260971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.700306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCC GAATCTCCAT TGAAGGGCAG TCCATGAGTG CCACGTCGCT CGACCGCCGC
ATCCAGATGC TGCGCACGGC GATGGGGCCG CTGATCGCCG CCGCGCTCGA AGACCCGGAC
GTGGTGGAGG TGATGCTGAA TCCCGATCGC ACCCTTTGGG TGGATCGGCT TTCCAGTGGG
CGCGCGCCGA TGGGCGTGGA ACTGCCCGAG GCGGACGGCG AGCGAATCAT CCGCCTCGTG
GCCGCCCACG TTGGCGCGGA AGTCCATCGC GGCCAGCCGC TGCTGTCCGC CGAGTTGCCC
GAGACGGGCG AACGCTTCGA GGGCATTTTG CCGCCGGCAG CGCCGGGGCC GGCCTTCGCG
CTGCGCAAGC GGGCCATCGG CGTGATTCCG CTGGAGCGCT ACGTCGTGGA GGGAATGATG
ACCGCCGCAC AGGCGGGCTT TCTCGTTCGC GCCGTACGCG AGCGGCAGAA CGTGCTGATC
GCCGGCGCCA CCAGCAGCGG CAAGACGACC TTGGCGAACG CGCTGCTGGC CGAGATCGCC
GCCACCGGCG ACCGCGTGCT GGTGCTCGAA GACACTGTGG AACTGCAATG CGCGGCCCGC
GACCACGTTC CGCTGCGCAC ACGCGCGGGC GTGGTGTCCA TGACGGAGCT GGTGCGCTCG
TCCATGCGAC TGCGGCCCGA TCGTGTCGTC GTCGGCGAGG TGCGCGGCGC CGAGGCGCTG
GATCTCATCA AGGTCTGGGG CACGGGCCAC CCCGGCGGCA TCGCCACGAT CCACGCCGGC
TCCGCGCTCG GCGCGCTGCT GCGCCTGGAG CAACTGATTC TCGAAGTGGC GGTGAACCCG
CCCCGCGCGC TGATCGCGGA AGCGGTCAAC GTGGTGATCC ACATCGCCGG GCGCGGGCGC
AAACGCCGCA TCGAGAGCAT CGCCCGCGTC GTCGGCTTCG ACGGCGTGGG CTACAGGCTG
GTGGATTGGG AGGCGGATGC ACTGGACACG CCGTTTCCCG AGCTGCCGCC GCTTCCCGAT
GCCGCACCCG CTGCGGCGAC TTTCCCATCC CCTGACTCAC TTGGAGAACT GCCATGA
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| Protein sequence | MSARISIEGQ SMSATSLDRR IQMLRTAMGP LIAAALEDPD VVEVMLNPDR TLWVDRLSSG
RAPMGVELPE ADGERIIRLV AAHVGAEVHR GQPLLSAELP ETGERFEGIL PPAAPGPAFA
LRKRAIGVIP LERYVVEGMM TAAQAGFLVR AVRERQNVLI AGATSSGKTT LANALLAEIA
ATGDRVLVLE DTVELQCAAR DHVPLRTRAG VVSMTELVRS SMRLRPDRVV VGEVRGAEAL
DLIKVWGTGH PGGIATIHAG SALGALLRLE QLILEVAVNP PRALIAEAVN VVIHIAGRGR
KRRIESIARV VGFDGVGYRL VDWEADALDT PFPELPPLPD AAPAAATFPS PDSLGELP
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