| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1516 |
|---|
| Symbol | pgk |
|---|
| ID | 4038319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1637843 |
|---|
| End bp | 1639033 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637976900 |
|---|
| Product | phosphoglycerate kinase |
|---|
| Protein accession | YP_583668 |
|---|
| Protein GI | 94310458 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0126] 3-phosphoglycerate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0183024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000800022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGAACGTGT TGCGCTTCGC CGACCTCGTC GCCCAGGGCC GCGTGTGCGG CCAGCGCGTC
TTCATCCGCG CCGACCTCAA CGTGCCGCAG GACGATGCGG GGAACATCAC CGAAGACACG
CGCATCCGCG CCTCGGTGCT CTGCATCCGC ATGGCGCTGG ACGCCGGCGC GGCGGTCATG
GTCACCTCGC ACCTCGGCCG CCCGACCGAA GGCGAGTTCA AGCCCGAGGA CTCGCTCGCG
CCGGTGGCCG CACGGCTCGC CGCGCTGCTC GGGCGGCCGG TGCCGCTGAA GTCGAACTGG
GTGGGTGGCG TGGACGTGCA GCCCGGCGAG GTGGTGTTGC TCGAGAACTG TCGCCTCAAC
AAGGGCGAGA AGAAGAACAG CGAGGCGCTG GCGCGCCAGA TGGCGGCGCT GACCGACATC
TTCGTGCACG ACGCCTTCGG CACCGCGCAC CGCGCCGAAG CCTCCACCTA CGGCATCGCG
CAGTTCGCGC CGGTGGCTTG TGCCGGCCCT CTGCTCGCGG CGGAAATCGA CGCGATCGGC
AAGGCGCTGG CTGCCCCGAA GCGCCCGCTG GTCGCCATCG TCGCCGGCAG CAAGGTCAGC
ACCAAGCTCA CGATCCTGCA AAGCCTGGCC AAGAACGTCG ATGGCCTGAT CGTCGGCGGC
GGCATCGCCA ACACCTTCCT GCTCGCGCAG GGCCTGCCGA TCGGCAAGAG CCTCGCCGAG
CCGGACTTGG TGGATGAGGC TAGGGCGGTG ATCGACGCGA TGAAGGCCCG CGGCGCCGAG
GTGCCGATCC CGGTGGACGT GGTCTGCGCC AAGGCGTTCA AGGCCGACGC GCCGGCCACC
GTCAAGGCCG TGGCCGAGGT GGACGACGAC GACCTGATCC TCGACATCGG CCCGCAGACC
GCCACGCTGC TCGCGCACAA GCTCGCGGCC GCCGGCACCA TCGTCTGGAA CGGACCGGTG
GGCGTATTCG AGTTCGACGC GTTCGCCAAC GGCACCAAGA CCATCGCGCG CGCGATCGCG
GCCAGCGACG CCTTCAGCAT CGCCGGCGGC GGCGACACGC TCGCGGCGAT CGCCAAGTAT
GGCATCGACA AGGACGTGGG CTACATCTCC ACCGGCGGTG GCGCCTTCCT TGAGGTGCTC
GAGGGCAAGA CGCTGCCGGC CTTCGAGATC CTGGCCAGGC GCGCGCAATG A
|
|---|
| Protein sequence | MNVLRFADLV AQGRVCGQRV FIRADLNVPQ DDAGNITEDT RIRASVLCIR MALDAGAAVM
VTSHLGRPTE GEFKPEDSLA PVAARLAALL GRPVPLKSNW VGGVDVQPGE VVLLENCRLN
KGEKKNSEAL ARQMAALTDI FVHDAFGTAH RAEASTYGIA QFAPVACAGP LLAAEIDAIG
KALAAPKRPL VAIVAGSKVS TKLTILQSLA KNVDGLIVGG GIANTFLLAQ GLPIGKSLAE
PDLVDEARAV IDAMKARGAE VPIPVDVVCA KAFKADAPAT VKAVAEVDDD DLILDIGPQT
ATLLAHKLAA AGTIVWNGPV GVFEFDAFAN GTKTIARAIA ASDAFSIAGG GDTLAAIAKY
GIDKDVGYIS TGGGAFLEVL EGKTLPAFEI LARRAQ
|
|---|
| |