| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1428 |
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| Symbol | |
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| ID | 4038231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1545334 |
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| End bp | 1547499 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637976812 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_583580 |
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| Protein GI | 94310370 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00223913 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGCCA AGAAACAAGG CGCGCAGGCT TCGGCCTCCG CGCCGTCCGG CGATTCCCCC
GCCGAGCGCG CGCAATGGTT GCGCGAAGAA CTGGAGCGCT ACAGCTACCA GTATTACGTG
CTCGATGCGC CGACGATTCC CGACGCCGAC TACGATGCGC TGTTCATCGA GTTGCAGGCG
CTGGAAGCCG AACATCCTGA GCTGCTGACA CCCGATTCCC CCACGCAGCG CGTGGGTGGT
GCGCCATTGT CGGCGTTCGA CTCGGTGCGC CACCGCGTGC CGATGCTGTC GCTCAACAAT
GGCTTCGAGG ACGAGGACGT CATCAACTTC GACCGGCGCT GCGCGCAGGG CCTCGGCCGT
GCCACGGCCG CAGCACCCGC AGCATTCGCG ACACCCGCCG CGCCGGCTGA CGATCTGTTC
AGCGCGGCCG ATGCCGCCGA GGCAGCCGCA AACACCGCCG GGAATGCCGT CGAGTACGCC
TGCGAGCTGA AGTTCGACGG GCTCGCGATG TCGCTGCGAT ACGAGAACGG AACGCTCGTG
CAGGCCGCCA CGCGCGGCGA CGGCGAGACG GGCGAAGACG TGACCGCGAA CGTGCGCACG
ATCAAGGCGA TTCCGCTCAA GCTGCGCGGC ACGGCCCCGT CCGTGCTGGA GGTGCGCGGA
GAGGTGTTCA TGTATCGCGC CGATTTCGAC AAGCTCAACG CGCGCCAGGC CGAATCGGGC
GAGAAGACAT TCGTCAATCC GCGCAACGCG GCGGCGGGCA GCCTTCGCCA GCTTGATCCG
CGTATCACGG CCAAGCGCCC GCTTTCGTTC TTTGCCTATG GCGTGGGCGA GATGGAAGGC
TTCGACCGTC CGGGCACGCA CAGCGCAATG CTTGACGGCT TTGCCAAGCT CGGTTTGCCT
GTTTGCGACG AGCGACGTGT GGTCCGGGGC GCCCAGGGCC TGCTGTCATT CCATCGCGAG
GTTGGCGAGC GTCGTGACCA GTTGCCGTAC GACATCGACG GCGTGGTCTA CAAAGTCAAT
GCGATTGCCG AACAGGAACA GCTCGGCTTT GTCTCGCGCG CGCCGCGTTT CGCGCTGGCG
CACAAGTTTC CTGCACAGGA GATGACCACT ACGGTCGAGG ACATCGAGGT CCAGGTCGGG
CGCACCGGTG CGATCACGCC GGTGGCGCGA CTGGCGCCAG TGTTTGTTGG CGGGGTCACC
GTGACCAATG CCACGCTGCA CAACGAGGAC GAGATCCGGC GCAAGGACGT GCATATCGGC
GACACGGTGA TCGTGCGCCG CGCGGGTGAC GTGATTCCGG AGGTGGTTGC CGTGGTGCTG
GAGCGCCGCC CGGCGGATGC CCGTGCGTTC GTGATGCCGA CTGAATGCCC GGTCTGCGGA
TCGCACGTGG AAAGGCTCGA AGGCGAGGCG ATTGCACGCT GCACGGGCGG GCTGATCTGC
GCTGCGCAAC GCAAGCAGGC GCTGCTGCAT TTCGCGCAGC GTCGGGCAAT GGATATCGAA
GGGCTGGGCG ACAAGGTGGT GGAGCAACTG GTCGACCTGG GCATCGTGCG CACGCCTGCC
GATCTCTATA AGCTCGGCGT GGCGAAGCTC GCGGCGCTGG ACCGGATGGC CGACAAGTCG
GCATCGAACC TGGTGGCGGC GATCGAGCAG TCTCGCGAGA CCACGATGAA CCGCTTTATC
TTCGCGCTCG GCATCCGTCA TGTAGGAGAG GCCACCGCCA AGGATTTGGC CAAGCACTTC
GGCAAGCTGG ACAACCTGCT GGCCGCGGAC GAGGCCGCCT TGCTCGAAGT CAACGACGTG
GGCCCCGTGG TGGCTCAGTC GATCGCCAAC TTCATTGCCG AACCGCACAA TGTCGAAGTT
ATCGAACAGT TGCGGGCGGC GGGTGTGCAC TGGGCCGAGA CAGAGCCGAC TGCGCGTGCG
CCGCTGCCCC TGGCTGGCAA GACGTTCGTG CTGACCGGCA CGCTGCCGAC GATGTCCCGC
GAGGACGCCA AGGAGAAGCT GGAAGCCGCT GGCGCCAAGG TGGCGGGTTC GGTGTCGAAG
AAGACCGACT ACGTAGTGGC CGGGGCCGAG GCGGGCAGCA AGCTCGAGAA GGCGCAGACA
CTGGGCGTGG CGGTGCTGGA CGAGGAAGGG ATGTTGAAGT TGCTGGCCGA GGTTGGCGCA
GCCTGA
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| Protein sequence | MTAKKQGAQA SASAPSGDSP AERAQWLREE LERYSYQYYV LDAPTIPDAD YDALFIELQA
LEAEHPELLT PDSPTQRVGG APLSAFDSVR HRVPMLSLNN GFEDEDVINF DRRCAQGLGR
ATAAAPAAFA TPAAPADDLF SAADAAEAAA NTAGNAVEYA CELKFDGLAM SLRYENGTLV
QAATRGDGET GEDVTANVRT IKAIPLKLRG TAPSVLEVRG EVFMYRADFD KLNARQAESG
EKTFVNPRNA AAGSLRQLDP RITAKRPLSF FAYGVGEMEG FDRPGTHSAM LDGFAKLGLP
VCDERRVVRG AQGLLSFHRE VGERRDQLPY DIDGVVYKVN AIAEQEQLGF VSRAPRFALA
HKFPAQEMTT TVEDIEVQVG RTGAITPVAR LAPVFVGGVT VTNATLHNED EIRRKDVHIG
DTVIVRRAGD VIPEVVAVVL ERRPADARAF VMPTECPVCG SHVERLEGEA IARCTGGLIC
AAQRKQALLH FAQRRAMDIE GLGDKVVEQL VDLGIVRTPA DLYKLGVAKL AALDRMADKS
ASNLVAAIEQ SRETTMNRFI FALGIRHVGE ATAKDLAKHF GKLDNLLAAD EAALLEVNDV
GPVVAQSIAN FIAEPHNVEV IEQLRAAGVH WAETEPTARA PLPLAGKTFV LTGTLPTMSR
EDAKEKLEAA GAKVAGSVSK KTDYVVAGAE AGSKLEKAQT LGVAVLDEEG MLKLLAEVGA
A
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