| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1423 |
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| Symbol | dapD |
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| ID | 4038226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1536967 |
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| End bp | 1537791 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637976807 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_583575 |
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| Protein GI | 94310365 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000216153 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0246651 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAAG CACTGCAAGC CCTGATCGAC CAGGCCTGGG AAGACCGCAC CAGCCTGTCG
CCGAAGTCCG CGCCGAACGA CATCCGCGAA GCGGTGGCCA ACGTGATCTC GCAACTCGAT
TCGGGCGCAC TGCGCGTGGC CGAGAAGCAA GGCAAGGACT GGGTCGTCAA CCAGTGGATC
AAGAAGGCTG TGCTGCTGTC GTTCCGTCTG GAAGACAACG CGCCGATGAG CGCTGGCGGC
TTTGCCCAGT TCTACGACAA GGTGCCGACC AAGTTCGCCA ACTGGACTGG CGACGACTTC
GCGAAGGCCG GCTTCCGCGT GGTGCCGCCC GCCGTGGCCC GCCGTGGTTC GTACATCGCC
AGGAACGCCG TGCTGATGCC GTCGTACGTC AACATTGGCG CCTACGTGGA TGAAGGCACG
ATGGTCGACA CGTGGGCTAC CGTCGGCTCG TGCGCGCAGA TCGGCAAGAA CGTGCACCTG
TCGGGCGGCG TCGGCATCGG CGGCGTGCTC GAGCCGCTGC AGGCCAACCC GGTCATCATC
GAGGACAACT GCTTCATCGG CGCCCGTTCG GAAGTCGTGG AAGGCGTGAT CATCGAGGAA
AACTCGGTGA TCTCGATGGG CGTGTACCTG GGCCAGTCGA CCAAGATCTA CGACCGTGAA
ACGGGCGAAA TCCACTACGG CCGCGTGCCT GCCGGTTCGG TCGTCGTGGC CGGCAACCTG
CCGTCGAAGG ATGGCAAGTA CAGCCTGTAC TGCGCCGTGA TCGTCAAGAA GGTGGACGCG
CAAACCCGCG CCAAGACCAG CCTGAACGAC CTGCTGCGCG ACTGA
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| Protein sequence | MTQALQALID QAWEDRTSLS PKSAPNDIRE AVANVISQLD SGALRVAEKQ GKDWVVNQWI
KKAVLLSFRL EDNAPMSAGG FAQFYDKVPT KFANWTGDDF AKAGFRVVPP AVARRGSYIA
RNAVLMPSYV NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII
EDNCFIGARS EVVEGVIIEE NSVISMGVYL GQSTKIYDRE TGEIHYGRVP AGSVVVAGNL
PSKDGKYSLY CAVIVKKVDA QTRAKTSLND LLRD
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