Gene Rmet_1407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1407 
Symbol 
ID4038210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1518979 
End bp1520871 
Gene Length1893 bp 
Protein Length630 aa 
Translation table11 
GC content67% 
IMG OID637976791 
Productoligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 
Protein accessionYP_583559 
Protein GI94310349 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0243275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.190368 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGA CCGTTTCGAA ACAAGGCATC GTGCTGCCGC CCGAGCGCGT GGTGGCCGTC 
GACAACCTCA CCGTGCGCTT CGCCACCTCG GAGCGTACCG TCGAGGCCGT GCGCAACCTG
TCGTTCCATG TCGACCGTGG CGAAACGCTG GCCGTGGTTG GCGAGTCGGG CTCGGGCAAG
TCGGTGACGT CGCTGGCGTT GATGCGCCTG GTGGAGCACG GTGGCGGCAA GATCGCCAAT
GGCGCCATGG CGCTGCGCCG GCGCAATGGC GAGGTGCTCG ATCTGGCCAA TGCCGGCGAA
TCGACGTTGC GCAAGGTGCG CGGCGCGGAC GTGGCGATGA TCTTCCAGGA GCCGATGACC
TCACTGAATC CGGTGTTTCC GGTTGGTGAG CAGATCGCGG AGTCGATTCG CCTGCACCAG
GGCAAGAACA AGGCCGCGGC CCTTGCCGAG GCGCTGCGTA TGCTGGAACT GGTGCGCATT
CCGGAAGCAC GGCGCGTGCT CGACCGCTTC CCGCATCAAC TCTCAGGCGG CATGCGGCAG
CGCGTGATGA TCGCGATGGC GCTGTCCTGC AAGCCGGGTT TGCTGATCGC GGACGAGCCG
ACCACCGCGC TCGACGTGAC GATCCAGGCG GAGATCCTGC AGCTTATCCG CAATCTCCAG
GCAGAGATGA ACATGGGCGT GGTTTTCATC ACGCACGACA TGGGCGTGGT GGCCGAGGTG
GCCGATCGTG TGCTGGTGAT GTACCGCGGC GAAAAGGTGG AAGAGGGCAC GTCCGACCAG
GTGTTCCACG CGCCCGCCCA CCCGTACACG CGCGCGCTGC TGTCGGCCGT GCCGAAGCTC
GGGGCGATGG CCGGCACCGA TCTGCCGGCC CGCTTCCCGC TGGTGCAGAT GAGCGACACC
GACAAGGTGG TCGAGGAAGC GCCGCAGGAC ACCATTCCGG CAGGCGCCGA GCCGATCCTG
CGCGTACGCG ACCTGGTGAC GCGCTTCGAT GTGCCAGGCG GCCTGTTTGG CAAGGTCACG
CGCCGCGTTC ACGCGGTGGA GCAGGTCAGC TTCGATCTCT ACCCGGGCGA GACGCTGGCG
CTGGTTGGCG AGTCGGGCTG CGGCAAATCG ACCACGGGAC GTTCGCTGTT GCGGCTGGTC
GATTCGCAGA GCGGCACGAT CGAGTTCGCA GGCCAGAACA TCAGCCAGAT GCGGGGACCG
GCGCTTCAGG CGCTACGCCG CAATATCCAG TTCATCTTCC AGGACCCGTT TGCGTCGCTG
GACCCGCGCG TGCCGGTTGG CTACTCGATC ATGGAGCCGC TGCTGGTGCA CAAGGTGGCC
AGCGGCAAGG AAGCCGAGGC GCGTGTCGCC TGGCTGCTCG AAAAGGTGGG CCTGACAGCC
GCGCACGCAT CGCGCTATCC GCACGAGTTC TCGGGCGGCC AGCGCCAGCG GATCTGCATC
GCGCGCGCCC TGGCGCTGAA CCCGAAGGTG GTCGTCGCCG ACGAATCGGT GTCGGCGCTC
GACGTGTCGA TCCAGGCGCA GATCGTCAAC CTGATGCTCG GCCTGCAGCG CGAGCTGGGC
GTGGCCTTCC TGTTCATCTC GCACGACATG GCCGTGGTGG AGCGCGTAAG CCACCGCGTG
GCCGTGATGT ATCTGGGCCA GATCGTCGAG ATCGGTCCGC GTCGCGCTAT CTTCGAGAAC
CCGCAGCACC CGTACACGAA GAAGCTGATG TCGGCGGTGC CAATTGCCGA TCCGGCCCGA
CGCCACATGA AGCGCGAGCC GCTGTCCGAC GAGATTCCCA GCCCGATCCG CGCGGTCGGC
GACGAGCCAG TGGTCCAGCC GCTGGTTGCC GTGGCCGGCA GTGGCGCGCA CGGACATTAC
GTAGCCCGGC ACGCCGTCGG CGGCGCCTAC TGA
 
Protein sequence
MAKTVSKQGI VLPPERVVAV DNLTVRFATS ERTVEAVRNL SFHVDRGETL AVVGESGSGK 
SVTSLALMRL VEHGGGKIAN GAMALRRRNG EVLDLANAGE STLRKVRGAD VAMIFQEPMT
SLNPVFPVGE QIAESIRLHQ GKNKAAALAE ALRMLELVRI PEARRVLDRF PHQLSGGMRQ
RVMIAMALSC KPGLLIADEP TTALDVTIQA EILQLIRNLQ AEMNMGVVFI THDMGVVAEV
ADRVLVMYRG EKVEEGTSDQ VFHAPAHPYT RALLSAVPKL GAMAGTDLPA RFPLVQMSDT
DKVVEEAPQD TIPAGAEPIL RVRDLVTRFD VPGGLFGKVT RRVHAVEQVS FDLYPGETLA
LVGESGCGKS TTGRSLLRLV DSQSGTIEFA GQNISQMRGP ALQALRRNIQ FIFQDPFASL
DPRVPVGYSI MEPLLVHKVA SGKEAEARVA WLLEKVGLTA AHASRYPHEF SGGQRQRICI
ARALALNPKV VVADESVSAL DVSIQAQIVN LMLGLQRELG VAFLFISHDM AVVERVSHRV
AVMYLGQIVE IGPRRAIFEN PQHPYTKKLM SAVPIADPAR RHMKREPLSD EIPSPIRAVG
DEPVVQPLVA VAGSGAHGHY VARHAVGGAY