| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1339 |
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| Symbol | |
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| ID | 4038142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1448292 |
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| End bp | 1450286 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637976723 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_583491 |
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| Protein GI | 94310281 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.953058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.786812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGTTCG GTCAGATCGC CGTGGTGTTC GGCATCGTGA TCGCCGGCGT GTGGGGCGCC
ACACAATGGA CAGCAGCGGC CCTTGGCTAT CAAGTACGCC TTGGCTCTCC CTGGTTCGAT
CTTCTTGGCA CGCCGATCTA CCACCCGTGG AAGCTGTTTG AGTGGTGGTT CTTCTTCGGC
GCCTATGCGC CGGAAGTATT CGACACCGGC GGCGCCATCG CCGGCGCCAG TGGCATGGTC
GCCGTGGGCG TTGCCATCGC CATGTCGGTC TGGCGCTCGC GCCAAGCTCG CCTCGTCACC
ACCTACGGCT CGGCGCGTTG GGCTAACGCG CAGGACATTC GCATGGCGGG CCTCACGCAT
CCAGCCGGCG TCTTCCTCGG CCAGCACGAC CGCCAGTACC TGCGGCATGA AGGCCCGGAA
CACGTCCTGA CCTTCGCGCC CACGCGCAGC GGCAAAGGTG TCGGCCTGGT GGTGCCGACG
CTGCTTTCCT GGCCTGCGTC CGCCGTCATC CACGACATCA AGGGCGAGAA CTGGCAGATC
ACCGCCGGCT GGCGCTCGCG CTTCTCGCAT TGCCTGCTGT TCAACCCCAC CGATGCGAAG
TCGGCCGCCT ACAACCCGCT GCTGGAGGTT CGCCGCGGCG CGCATGAGGT GCGCGACGTG
CAGAACATCG CGGACATTCT GGTCGATCCC GAAGGCGCGC TGGAGAAGCG AAACCATTGG
GAAAAGACCA GCCACGCGCT GCTGGTCGGG GCCATCCTGC ATGTGCTCTA CGCGGGCGAG
GACAAGACGC TGCGCGGCGT CGCCAACTTC CTCTCCGACC CGGCCAGCCC CTTCGAGCTG
ACCTTGCACC GGATGATGAC CACGCTTCAC CTCGGCGATG GCCCACATCC GGTAGTGGCG
TCCGCTGCGC GCGAAGTGCT CAACAAGTCG GACAACGAGC GTTCCGGCGT ATTGAGCACC
GCCATGTCGT TCTTGGGCCT CTACCGTGAT CCGACGGTGG CCGAAATCAC GTCGCGCTGC
GACTGGCGCA TTGCCGACCT GATCGCGGCC GAGCATCCGG TGTCGCTGTA CCTGGTGGTG
CCGCCTTCGG ACATTTCGCG GACGAAGCCG CTCATCCGCC TGATCCTCAA CCAGATCGGG
CGGCGGCTCA CCGAATCGCT CGATGGCTCC GACGGCATTC AGCGCCGCCA CAAGCTGCTG
CTGATGCTCG ATGAGTTCCC GGCGCTGGGG CGCCTGGACT TCTTCGAGAC GGCGCTGGCC
TTCATGGCCG GCTACGGCAT CCGCAGCTTC CTCATCGCGC AGTCGCTCAA CCAGATCGAC
AAGGCGTATG GGCAGAACCA TTCGATTCTG GACAACTGCC ATGTGCGCGT GACGTTCGCC
ACGAACGACG AACGCACCGC CAAGCGGATT TCCGAGACGC TGGGCACAGC GACCGAACTG
CGCGCCCAGC GCAATTACGC AGGCCACCGG CTGGCTCCGT GGCTGGGCCA CCTCATGGTG
TCGCGTCAGG AAACCGCGCG CCCGCTGCTG ACGCCCGGCG AAGTCATGCA GCTTCCGCCT
GACGTGGCGG TGGTGATGGT GTCGAGCGTG GCGCCGATCA AGGCGAAGAA GCTGCGCTAC
TACGCGGACG CCAATTTCAA GCGTCGCGTG CTGCCGCCGC CCACGCTGGC GAACGGGCAG
TACGCAGACG CGCCGCCATT GCGATCCGAC GACTGGAGTG GGCTGGCGAT TCCTGCTGGG
CCCACCGCAC CAGCCACGGC ATCCGCCGAT GGCCTGGAGG ACTTGGGTAC GGCCGACGAC
GGCGGCCCGC GCCGTCAGCC CGAACTCTCC GAAACCGTCG CTTACGACCC CGAGCTGGCC
GCTCCCGCGG CCGACCTTGG GCTGCTCGAT GACGACGACG ACCTGCCGCT TCCGCTTCCT
CGCCAGCTCG ATCTAGCCAT GCATCGCACG GCCCGGCTGG CTTCCCTCGA CCCCAACGAC
GGAATCGAGC TATGA
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| Protein sequence | MLFGQIAVVF GIVIAGVWGA TQWTAAALGY QVRLGSPWFD LLGTPIYHPW KLFEWWFFFG
AYAPEVFDTG GAIAGASGMV AVGVAIAMSV WRSRQARLVT TYGSARWANA QDIRMAGLTH
PAGVFLGQHD RQYLRHEGPE HVLTFAPTRS GKGVGLVVPT LLSWPASAVI HDIKGENWQI
TAGWRSRFSH CLLFNPTDAK SAAYNPLLEV RRGAHEVRDV QNIADILVDP EGALEKRNHW
EKTSHALLVG AILHVLYAGE DKTLRGVANF LSDPASPFEL TLHRMMTTLH LGDGPHPVVA
SAAREVLNKS DNERSGVLST AMSFLGLYRD PTVAEITSRC DWRIADLIAA EHPVSLYLVV
PPSDISRTKP LIRLILNQIG RRLTESLDGS DGIQRRHKLL LMLDEFPALG RLDFFETALA
FMAGYGIRSF LIAQSLNQID KAYGQNHSIL DNCHVRVTFA TNDERTAKRI SETLGTATEL
RAQRNYAGHR LAPWLGHLMV SRQETARPLL TPGEVMQLPP DVAVVMVSSV APIKAKKLRY
YADANFKRRV LPPPTLANGQ YADAPPLRSD DWSGLAIPAG PTAPATASAD GLEDLGTADD
GGPRRQPELS ETVAYDPELA APAADLGLLD DDDDLPLPLP RQLDLAMHRT ARLASLDPND
GIEL
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