| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1305 |
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| Symbol | |
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| ID | 4038108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1419138 |
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| End bp | 1420982 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637976691 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_583459 |
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| Protein GI | 94310249 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.506042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0778502 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGAGG AGAAAGGGAA AGCGGGAGAA ATAGACAGAG GAATACCGCT TTTCGTGCCA
GATGTAGTGG CTGATCTGCA TTTTCCGGAC ATTCGGGATC TGGCGGAACG GCTTCGTTTC
AATCCTGCGG ACGGTCGCAT CTGGCTCGAC GATCGTCGAA TGGTCTTGAT CCATACGGAC
GCGTTTGCTT CACTGCGACA GGAACTCATC GAAGCTTTAG GTAGCGATGC TGCGCGCGGA
TTGCTGACCC GCATGGGATA TCTATCGGGT TCTCGGGATG CCGCGCTCGC ACGAAAGGTT
CGCGGGCAAG ACAGCGCATT TGATGCCTTC GCGGTAGGTC CTCAACTTCA CGCCCTGGAA
GGCATCGTCC TGGTAGAACC TGTCAGAGTG GATATCGACA GCACCACCGG TCAGTATTAC
GGGGAATTTC TGTGGAAAGA CTCGTCCGAG GATGAGGCTC ACATATCCGT GTACGGCATC
GGCTCCGAAC CAGCCTGCTG GATGCAGATT GGCTACGCGT GCGGCTACAC GAGCGCTTTC
ATGGGCCGGC GTATTCTATA CCGGGAAGTC GAATGCCGCG CGATGGGCAA TACATTATGT
CGAATCATTG GAAAGCCCGT GGACGAGTGG GACGCCCCCG ATGCGGATCT TCGGTATATG
CTGCCACAAT CTCTGGAGAA ACGTCGCTTT GTCGCGTTGA AAAGTTCAGG GCCAGCCCCG
ACTGACTCTA CAGATCATGA GTGTGTGCCT TGCAAGCCTG ACGAAGTGCC TGTCAAAGAA
GGACCAATAG GGGCGTCTGC TGGATTCAAC GCAGTGATGC ACAAAATATT CAGAGTGGCT
CCCACTAGTG CGACCGTTTT ACTGATGGGC GAGAGCGGCG TGGGCAAAAG CCTGTTTGCT
CGGGAACTGC ACAACAGAAG TTCGCGTGTA GGGAAACCAT TCGTTGAATT AAATTGTGCA
GCTCTTCCCG ATTCGCTGAT TGAATCGGAG CTTTTTGGTG TGGAGCGAGG GGCATTCACC
GGCGCATCCG ATGCCCGCGT TGGGCGTTTC GAAAGCGCAA ACGAAGGGAC CATTTTTTTG
GATGAGATTG GTAATCTCAG TCTAACCGCT CAAGCGAAGC TATTGAGAGT TTTGCAAACG
GGGGAGATGG AGCACCTCGG GAGTTCAAAG ACGGTTAAGG TAAATGTTCG GGTAATTACT
GCGACTAATG ACAACCTCAA ACAGGCGATA AAAAGCGGGC GTTTTCGTGA GGATCTTTTC
TACCGGCTGA ATGTATTTCC AATTGTTATT CCACCTTTGC GTGAAAGAAA GGATGATATC
CCGGTTTTGC TGGAATTTTT CATAAAGAAA TTTTCAAAAA GGCATGGTCG GTCCCTCAAG
GGCTTATCCA ATCGTGCGCT TCATCTATTG CTGGATTACT CGTGGCCCGG GAATATCCGC
GAGATGGAAA ATGTGCTCGA ACGTGGCGTT ATCCTCGCCG AGGAAGGCGG TACGCTCGAT
GTATGCCACT TGTTTAGTAG CGGTGACACC GTGGAATGTA AGGGTGCTTT TGGTTTAAGC
GACCTTGGGT CGCTTGCCCT CGATTCCATA TCGACGAGCG CTCCCCCCGA GACGATCCGC
AAGAGCGGAG AAGCCCCGGA GGGGCTCGAG GATTGGGCAG CGCTTGCTGT ACAGATGAAC
AAAGCGACAC TTTGCGAGGT CGAAGATGCG CTCGTACGCG CGGCACTCAA AGCCGCGAAC
GGGAACATAT CAGAAGCCGC ACGTCTTCTC GGATTGACAC GCGCGCAACT CGACTACCGT
GTCAAGAAGT TGAACAATTC AATGCCAATC TCGACGGAGA AGTAG
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| Protein sequence | MKEEKGKAGE IDRGIPLFVP DVVADLHFPD IRDLAERLRF NPADGRIWLD DRRMVLIHTD
AFASLRQELI EALGSDAARG LLTRMGYLSG SRDAALARKV RGQDSAFDAF AVGPQLHALE
GIVLVEPVRV DIDSTTGQYY GEFLWKDSSE DEAHISVYGI GSEPACWMQI GYACGYTSAF
MGRRILYREV ECRAMGNTLC RIIGKPVDEW DAPDADLRYM LPQSLEKRRF VALKSSGPAP
TDSTDHECVP CKPDEVPVKE GPIGASAGFN AVMHKIFRVA PTSATVLLMG ESGVGKSLFA
RELHNRSSRV GKPFVELNCA ALPDSLIESE LFGVERGAFT GASDARVGRF ESANEGTIFL
DEIGNLSLTA QAKLLRVLQT GEMEHLGSSK TVKVNVRVIT ATNDNLKQAI KSGRFREDLF
YRLNVFPIVI PPLRERKDDI PVLLEFFIKK FSKRHGRSLK GLSNRALHLL LDYSWPGNIR
EMENVLERGV ILAEEGGTLD VCHLFSSGDT VECKGAFGLS DLGSLALDSI STSAPPETIR
KSGEAPEGLE DWAALAVQMN KATLCEVEDA LVRAALKAAN GNISEAARLL GLTRAQLDYR
VKKLNNSMPI STEK
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