| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1298 |
|---|
| Symbol | |
|---|
| ID | 4038101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1414328 |
|---|
| End bp | 1415422 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637976684 |
|---|
| Product | hydrogenase (NiFe) small subunit HydA |
|---|
| Protein accession | YP_583452 |
|---|
| Protein GI | 94310242 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.102659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.737365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCT TTTACGAGAT CATGCGCCGC AAAGGCATTT CGCGCCGCAG TTTCATGAAG
TACTGCTCGC TCACCGCCAC CTCGCTGGGG CTGGCACCGA GCTTTGTGCC CCAGATCGCC
CACGCGATGG AAAACAAGCC GCGCACCCCG GTGCTCTGGC TGCACGGTCT GGAATGCACC
TGCTGCACCG AAGCCTTCAT CCGCTCGGCC CACCCGCTGG CCAAGGACGT GGTGCTCTCC
ATGATCAGCC TGGACTACGA CGACACCCTG ATGGCCGCCG CCGGCCACCA GGCCGAGGCC
ATCCTCGAAG AGATCATGAC CAAGTACAAG GGTCAGTACA TCCTGGCGGT GGAAGGCAAT
CCGCCGCTGA ACGAAGACGG CATGTTCTGC ATCCAGTCGG GCAAGCCCTT CATCGACAAG
CTCAAGCACG TGGCCAAGGA CGCCAAGGCC ATCATCGCCT GGGGTTCGTG CGCCAGCTGG
GGCTGCGTGC AGGCCGCCAA GCCCAACCCG ACCCAGGCCA CGCCCATCCA CAAGGTCATC
ACCGACAAGC CCATCATCAA GGTGCCGGGC TGCCCGCCCA TCCCCGAGGT GATGACGGGC
GTGATCACCT ACATGCTGAC CTTCGACCGC ATTCCCGAGC TGGACCGCCA GGGCCGCCCG
AAGATGTTCT ACAGCCAGCG CATCCACGAC AAGTGCTACC GCCGCCCTCA CTTCGACGCC
GGCCAGTTCG TCGAGGCGTG GGACGACGAC TCCGCGCGCA AGGGCTACTG CCTCTACAAG
GTGGGCTGCA AGGGCCCGAC CACCTACAAC GCCTGCTCCA CCGTGCAGTG GAACGAGGGC
ACGAGCTTCC CCATCAAGGC CGGCCACGGT TGCATCGGCT GCTCGGAAGA CGGCTTCTGG
GACAAGGGTT CGTTCTACGA CCGCCTCACC GACATCCACG CCTTCGGCAT CGAAGCCAAT
GCCGACCAGA TCGGTGGCAC GGCCGCCGGC GTGGTGGGCG CGGCGGTGGC GGCCCACGCG
GCCATCTCGG TGGCCAAGCG CGTGCGCGAC AACAACGCCC GCAAGCCCGA CGCATCCACA
CCCGCCAACC ACTGA
|
|---|
| Protein sequence | METFYEIMRR KGISRRSFMK YCSLTATSLG LAPSFVPQIA HAMENKPRTP VLWLHGLECT
CCTEAFIRSA HPLAKDVVLS MISLDYDDTL MAAAGHQAEA ILEEIMTKYK GQYILAVEGN
PPLNEDGMFC IQSGKPFIDK LKHVAKDAKA IIAWGSCASW GCVQAAKPNP TQATPIHKVI
TDKPIIKVPG CPPIPEVMTG VITYMLTFDR IPELDRQGRP KMFYSQRIHD KCYRRPHFDA
GQFVEAWDDD SARKGYCLYK VGCKGPTTYN ACSTVQWNEG TSFPIKAGHG CIGCSEDGFW
DKGSFYDRLT DIHAFGIEAN ADQIGGTAAG VVGAAVAAHA AISVAKRVRD NNARKPDAST
PANH
|
|---|
| |