Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1271 |
Symbol | |
ID | 4038074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1393469 |
End bp | 1394701 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637976657 |
Product | phage integrase |
Protein accession | YP_583425 |
Protein GI | 94310215 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.896321 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0119714 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCGA CACGCACAGT CAGCGAATCC GGCGGGCTAC CGGCCCATCA CATCGATGCA TTTCTTGATC GTCTACGGAC GGCTCACTAC TCCGAGGTAT CGCTTCGCAA GAAACGAAGA GTCCTGTGTG CGTTCTCTGG GTGGATGAAG CACAGGAACA TCGACCTGAT TGACCTCGAT GAGTCTGTCA CGGCTCGTTT TATGAAGCGC ATGATCGACG CATCACGAGA CCGCGTCCAG CGTGCTCGTC CCACATTGCG GCAGTTTCTC GCCTATCTGC GCGCGGAAGC CATTGTGTGT TCGCCGACAT TAGGCAGCCA GTCCGCGATC GCGCACACTT ATCGCCGATA CTTGGACTAT CTGAGGCAGG ATCGTGGACT CGCGAAGAAC TCTCTGCTCG TCTACGGCCC GTTCATTCGC GACTTTCTCG ACAGTCACTC GGCCGGCGAC GGAAGTTTAT TGCCAGATGC ATTTGACGCG GTAACGATCC GGAATCATCT TCTTGCCCGC AGCAAAGGCC GATCGGCGGA ATACACGCGG CTGATGGCAG TTGCGCTTCG CTCGTTCTGC CATTTCCTCT TTCTGCGTGG CGATACGGCC CGAGACCTGG CTGGGTCAGT GCCCTCGGTT CGTAAGTGGC GACAGTCGAC TGTGCCGACG TTCCTCACGC CTGAGCAGCA AGAAGCTCTC ATTGCATCTG CAGACCGGTC GACTCCGACT GGGCTCCGTG ACTATGCAAT CCTGCTGTTG TTGGCGAGGC TCGGCTTACG TGCCGGAGAA ATCATCGAGA TCGAGCTCGA CGACATTCAC TGGCGTTCGG GGGAACTCGT CGTTCATGGC AAGGGGCAAA TGGTCGAGCA CGTGCCGCTC TCATCGGAGG TTGGAGCAGC AATCGCAACA TATCTCCGCG ATGGTCGCGG AGCGAGTGCA TCGCGTCGCG TCTTCCTTCG CAGATTGGCG CCTCGAGTTG GTTTGGCGGG CCCGGCGGCG ATTGGCAAGA TTGTTTGTCA GGCCTTCGCA CGTGTTGGTT TCCGCCCCGC GTGCAGGGGC GCTGCACATC TGTTCCGTCA CGGTCTGGCG ACGACGATGA TTCGCCACGG GGCCTCGATG GCAGAAATCG CCGAGGTCTT GCGGCACCGC TCACCCGACA GTACCGCGAT CTACGCAAAG GTCGCGTTTG AGGACCTGCG CGGTGTCGCG CGTTCGTGGC CCACGGCAGG AGGTGCAATA TGA
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Protein sequence | MNATRTVSES GGLPAHHIDA FLDRLRTAHY SEVSLRKKRR VLCAFSGWMK HRNIDLIDLD ESVTARFMKR MIDASRDRVQ RARPTLRQFL AYLRAEAIVC SPTLGSQSAI AHTYRRYLDY LRQDRGLAKN SLLVYGPFIR DFLDSHSAGD GSLLPDAFDA VTIRNHLLAR SKGRSAEYTR LMAVALRSFC HFLFLRGDTA RDLAGSVPSV RKWRQSTVPT FLTPEQQEAL IASADRSTPT GLRDYAILLL LARLGLRAGE IIEIELDDIH WRSGELVVHG KGQMVEHVPL SSEVGAAIAT YLRDGRGASA SRRVFLRRLA PRVGLAGPAA IGKIVCQAFA RVGFRPACRG AAHLFRHGLA TTMIRHGASM AEIAEVLRHR SPDSTAIYAK VAFEDLRGVA RSWPTAGGAI
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