Gene Rmet_1271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1271 
Symbol 
ID4038074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1393469 
End bp1394701 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content59% 
IMG OID637976657 
Productphage integrase 
Protein accessionYP_583425 
Protein GI94310215 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.896321 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0119714 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCGA CACGCACAGT CAGCGAATCC GGCGGGCTAC CGGCCCATCA CATCGATGCA 
TTTCTTGATC GTCTACGGAC GGCTCACTAC TCCGAGGTAT CGCTTCGCAA GAAACGAAGA
GTCCTGTGTG CGTTCTCTGG GTGGATGAAG CACAGGAACA TCGACCTGAT TGACCTCGAT
GAGTCTGTCA CGGCTCGTTT TATGAAGCGC ATGATCGACG CATCACGAGA CCGCGTCCAG
CGTGCTCGTC CCACATTGCG GCAGTTTCTC GCCTATCTGC GCGCGGAAGC CATTGTGTGT
TCGCCGACAT TAGGCAGCCA GTCCGCGATC GCGCACACTT ATCGCCGATA CTTGGACTAT
CTGAGGCAGG ATCGTGGACT CGCGAAGAAC TCTCTGCTCG TCTACGGCCC GTTCATTCGC
GACTTTCTCG ACAGTCACTC GGCCGGCGAC GGAAGTTTAT TGCCAGATGC ATTTGACGCG
GTAACGATCC GGAATCATCT TCTTGCCCGC AGCAAAGGCC GATCGGCGGA ATACACGCGG
CTGATGGCAG TTGCGCTTCG CTCGTTCTGC CATTTCCTCT TTCTGCGTGG CGATACGGCC
CGAGACCTGG CTGGGTCAGT GCCCTCGGTT CGTAAGTGGC GACAGTCGAC TGTGCCGACG
TTCCTCACGC CTGAGCAGCA AGAAGCTCTC ATTGCATCTG CAGACCGGTC GACTCCGACT
GGGCTCCGTG ACTATGCAAT CCTGCTGTTG TTGGCGAGGC TCGGCTTACG TGCCGGAGAA
ATCATCGAGA TCGAGCTCGA CGACATTCAC TGGCGTTCGG GGGAACTCGT CGTTCATGGC
AAGGGGCAAA TGGTCGAGCA CGTGCCGCTC TCATCGGAGG TTGGAGCAGC AATCGCAACA
TATCTCCGCG ATGGTCGCGG AGCGAGTGCA TCGCGTCGCG TCTTCCTTCG CAGATTGGCG
CCTCGAGTTG GTTTGGCGGG CCCGGCGGCG ATTGGCAAGA TTGTTTGTCA GGCCTTCGCA
CGTGTTGGTT TCCGCCCCGC GTGCAGGGGC GCTGCACATC TGTTCCGTCA CGGTCTGGCG
ACGACGATGA TTCGCCACGG GGCCTCGATG GCAGAAATCG CCGAGGTCTT GCGGCACCGC
TCACCCGACA GTACCGCGAT CTACGCAAAG GTCGCGTTTG AGGACCTGCG CGGTGTCGCG
CGTTCGTGGC CCACGGCAGG AGGTGCAATA TGA
 
Protein sequence
MNATRTVSES GGLPAHHIDA FLDRLRTAHY SEVSLRKKRR VLCAFSGWMK HRNIDLIDLD 
ESVTARFMKR MIDASRDRVQ RARPTLRQFL AYLRAEAIVC SPTLGSQSAI AHTYRRYLDY
LRQDRGLAKN SLLVYGPFIR DFLDSHSAGD GSLLPDAFDA VTIRNHLLAR SKGRSAEYTR
LMAVALRSFC HFLFLRGDTA RDLAGSVPSV RKWRQSTVPT FLTPEQQEAL IASADRSTPT
GLRDYAILLL LARLGLRAGE IIEIELDDIH WRSGELVVHG KGQMVEHVPL SSEVGAAIAT
YLRDGRGASA SRRVFLRRLA PRVGLAGPAA IGKIVCQAFA RVGFRPACRG AAHLFRHGLA
TTMIRHGASM AEIAEVLRHR SPDSTAIYAK VAFEDLRGVA RSWPTAGGAI