| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1267 |
|---|
| Symbol | |
|---|
| ID | 4038070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1389124 |
|---|
| End bp | 1390662 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637976653 |
|---|
| Product | RND efflux system outer membrane lipoprotein NodT |
|---|
| Protein accession | YP_583421 |
|---|
| Protein GI | 94310211 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0522165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0121166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCA AGCCCCGCAC TCCCTTTCTT CGCGCAACCG TCACCGGCCT GACCCCTGGG
CGCGCGCGTC CGCTCGCGCT GGCCCTGTCC TGCGTGCTGC TGACTGCCTG CGCAAGCGTG
GGCCCCGACT ACCGCGAGCC GCCGCCGGTC GACGTCGGCA GCGGCTGGAG CTTGCCGTTG
GCAAGCGAAT CCCAGTCCGC AGACTTGAGC CAATGGTGGT CTGCACTGGA CGATCCCATC
CTCGATCGCC TGATGGCCAC GGCGCTGGCA CAGAACCTGG ATCTGCGCCA GGCTGCGGCA
CGCATCGATG AGGCACGCGC CCTGCGCGAT CGTGTGGCCG GCGAGGCATT GCCCACCGCC
GCCGCTGGCG CGAGCGTCAA CCGGCGCCGT CAAAGCGAGA ACGGCCCCTT GCCCGTAGGC
TCGATCCCCG GCCTTGACGC CACGCAGACC ATCTACGACG CGGGCTTCGA CGCGGCCTGG
GAGGCCGACT TGTTCGGGGC CAAGCGGCGC GCCCTGGAAG GCGCCAACGC CCGCCTGCAG
GCGACCGAAG CCGAGGCACA GGGCATACGC ATGCGCATCG TGGCCGAGGT CGCGCGCACC
TGGTTCACCG CCGTCGGCGC CCGCTACGAG TTGCACGCAC AACAGGCCAC GCTGGATACG
CTGCAGCAGA CTTGGGAATT GGTGCGCCTT CGGCATGCGC TGGGCGACGC GTCGACCGCC
GACGTGGAGG CGGCGTACGC CCAATGGACA GCAGTCAACG CGCTCATCCC GGATATCCAG
GCGCGCCAGC GCGCCGCGGT ACTCAGCCTG GGCGTGCTGC TGGGCGCACC GCCGGAGCGG
GAGCTGGCAC TGCTGGATGG CCCCTTGACG CCGAGCACGC TGCGGGCGCT GCCGGTGGGC
GAGCGTGCCG ACATGCTGCG CCGGCGCCCT GACGTACTGG CTGCGGAACG TCGCCTGGCG
GCGAGTTCTG CCGACATCGG CGTGGCCACG GCCGAGTTGT TCCCCAAACT CTCCATTGGT
GTCGGCGGCG GGTTCCAAGC GCTCAGTACG GGCGATTGGT TCGATGCATC CAGTTCGCGT
TTTTCCATCC TGCCGCTGAT TTCCTGGCGC CTGTTCGACG GCGGCCGCGT GCGCGCCGAG
ATTCGGGCGC GCGAGGCGGG GCAGCGGCAG GCCGCGCTGG CCTACGAGCA GGCCGTGCTG
GCGGCGCTGG GCGACGCCGA ACGCGCGCTG GGCGACTACC ACGGCGGGCT GGACACACTG
GAACGCCGTG GCATGGCACT GGATGCCGCG CGCACAAGCT ACGGCCACGC CAAGGCGCGC
TACGCGGCGG GCGACATTGC ACTGGTCGAA CTGCTGGCCG CCCAGCGAAG CCTGCACGAG
GCCGAAACCG CAGCGGCACG CGCGCATACC AACGCCGCCG TGCAATTGGT GGCGCTGTAC
AAGGCCCTTG GTGGCGGCTG GGACGTATCC ACGGCGGCAT CCAGCGCAAC CCATCTGCTG
CGGGGCACTG CCGCCCCCGT CGCGTTTTCA AGCCGCTGA
|
|---|
| Protein sequence | MKSKPRTPFL RATVTGLTPG RARPLALALS CVLLTACASV GPDYREPPPV DVGSGWSLPL
ASESQSADLS QWWSALDDPI LDRLMATALA QNLDLRQAAA RIDEARALRD RVAGEALPTA
AAGASVNRRR QSENGPLPVG SIPGLDATQT IYDAGFDAAW EADLFGAKRR ALEGANARLQ
ATEAEAQGIR MRIVAEVART WFTAVGARYE LHAQQATLDT LQQTWELVRL RHALGDASTA
DVEAAYAQWT AVNALIPDIQ ARQRAAVLSL GVLLGAPPER ELALLDGPLT PSTLRALPVG
ERADMLRRRP DVLAAERRLA ASSADIGVAT AELFPKLSIG VGGGFQALST GDWFDASSSR
FSILPLISWR LFDGGRVRAE IRAREAGQRQ AALAYEQAVL AALGDAERAL GDYHGGLDTL
ERRGMALDAA RTSYGHAKAR YAAGDIALVE LLAAQRSLHE AETAAARAHT NAAVQLVALY
KALGGGWDVS TAASSATHLL RGTAAPVAFS SR
|
|---|
| |