| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1227 |
|---|
| Symbol | |
|---|
| ID | 4038030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1347374 |
|---|
| End bp | 1348240 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637976614 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_583382 |
|---|
| Protein GI | 94310172 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0358415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0652986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTG TCTCGTTTCT GATCCAGTGC CTGAACAGCG TGCAGTACGG GCTGCTGCTG
TTCCTCGTGG CCAGCGGCTT GACGCTGATC TTCGGCATCA TGGGCGTGAT CAATCTCGCA
CATGGCAGCT TCTACATGCT GGGGGCCTAT CTGGCATTCA CGCTGGCCAG CCTGACGGGC
AACCTGTTCA TTGCGCTGCC GCTCGGCATC GTGCTGGCCG TGCTGTTCGG GTACGTGCTG
GAGTGGGCCT TCTTCAGCTA CCTGTATCAG CGTGACCACC TGCAACAGGT GCTGATGACA
TACGGGCTAA TCCTGGTCTT CGAGGAGTTG CGCAGCATCC TGGTGGGCGA CGACGTGCAC
GGTGTGCAAG TGCCGTCGCT GCTAGACTGG TCGCTGCCGG TGGGCAACGA CATGACCTAT
CCGGTGTATC GCCTGTTCAT CTCCGCCGTC TGCCTGTTGG TGGCCGGCGC GATGTACTAC
GTGATTCGCC GCACGCGTGT GGGCATGATG ATCCGCGCCG GCGCCACGAA CCGCGAGATG
GTGCAGTCGC TTGGCGTCAA CGTGACCGTG CTCTATCGTT TCGTGTTCGC GCTCGGCGTG
GCCCTGGCCG TGCTGGCAGG CATGATCGCC GCGCCGGTTT CCTCGGTCTA CCCGGGCATG
GGCGGGCAGG TGCTGATCAT CTGCTTTGTC GTGGTCGTGA TCGGCGGTAT CGGCTCGGTC
AAGGGTGCGC TGGTGGCGTC GCTGCTGATC GGCTTCGTCG ATACGTTCGG CAAGGTGTTC
TGGCAGGATG CGGCTGGCGT GCTGGTCTAC CTGCTGATGG CCGTGATCCT GCTGTGGAAG
CCCCAGGGGC TGTTCCGCGC GGGCTGA
|
|---|
| Protein sequence | MDLVSFLIQC LNSVQYGLLL FLVASGLTLI FGIMGVINLA HGSFYMLGAY LAFTLASLTG
NLFIALPLGI VLAVLFGYVL EWAFFSYLYQ RDHLQQVLMT YGLILVFEEL RSILVGDDVH
GVQVPSLLDW SLPVGNDMTY PVYRLFISAV CLLVAGAMYY VIRRTRVGMM IRAGATNREM
VQSLGVNVTV LYRFVFALGV ALAVLAGMIA APVSSVYPGM GGQVLIICFV VVVIGGIGSV
KGALVASLLI GFVDTFGKVF WQDAAGVLVY LLMAVILLWK PQGLFRAG
|
|---|
| |