| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1083 |
|---|
| Symbol | |
|---|
| ID | 4037880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1175061 |
|---|
| End bp | 1175669 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637976464 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
|---|
| Protein accession | YP_583238 |
|---|
| Protein GI | 94310028 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.218245 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0255196 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTTT CCCGCCGCAT CGTCCTGACC GGCCTGATGG CCGCCGCCAC TGCCCTGTCT
CCGCTGGCCG CAATGGCCCA GGGCGCCAGC CCCGCCACCG CCGCGCCGAA GACCGAGCGC
GTGCAGTTCG TGACGAGCGC CGGCAAGTTC ACTATCGAGC TGTACCCCGA TGCCGCCCCG
AAGACCGTGG CCAACTTCAT GGGCTACGTA AAAAGCGGCT TCTATTCCGG CACGATCTTC
CATCGCGTGA TCAACGGCTT CATGGTTCAG GGCGGTGGCT TCGACCGCGA CATGAAGGAA
AAGCCGACGC TGGCGCCGAT CGCGCTGGAA TCGCAGAACG GCCTGAAGAA CAAGGCCGGG
ACCGTCGCCA TGGCACGCAC GTCGAACCCG AACTCGGCAA CCGCCCAGTT CTTCGTCAAT
GTGGTGGATA ATCCGAACCT CGACTACCCA CAGCCGGACG GCAATGGATA TGCCGTCTTT
GGCAAGGTGG TAGAGGGAAT GGACACGATC GACAAGATCA AGACCACGCC GACTACGGCG
TATGGCGCCA TGCGCAACGT GCCTGCCGCG CCGATCGTGA TCGAATCGGC CACCGTGGTC
ACCAAGTGA
|
|---|
| Protein sequence | MILSRRIVLT GLMAAATALS PLAAMAQGAS PATAAPKTER VQFVTSAGKF TIELYPDAAP
KTVANFMGYV KSGFYSGTIF HRVINGFMVQ GGGFDRDMKE KPTLAPIALE SQNGLKNKAG
TVAMARTSNP NSATAQFFVN VVDNPNLDYP QPDGNGYAVF GKVVEGMDTI DKIKTTPTTA
YGAMRNVPAA PIVIESATVV TK
|
|---|
| |